Strain Fitness in Shewanella loihica PV-4 around Shew_0532

Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0531 and Shew_0532 are separated by 247 nucleotidesShew_0532 and Shew_0533 are separated by 132 nucleotides Shew_0531: Shew_0531 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 600,553 to 602,352 _0531 Shew_0532: Shew_0532 - peptidase M28 (RefSeq), at 602,600 to 603,628 _0532 Shew_0533: Shew_0533 - excinuclease ABC, A subunit (RefSeq), at 603,761 to 606,586 _0533 Position (kb) 602 603 604Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 601.999 kb on - strand, within Shew_0531at 602.191 kb on - strandat 602.362 kb on - strandat 602.363 kb on - strandat 602.879 kb on - strand, within Shew_0532at 602.879 kb on - strand, within Shew_0532at 602.982 kb on + strand, within Shew_0532at 602.982 kb on + strand, within Shew_0532at 602.990 kb on - strand, within Shew_0532at 602.990 kb on - strand, within Shew_0532at 603.018 kb on + strand, within Shew_0532at 603.112 kb on - strand, within Shew_0532at 603.523 kb on + strand, within Shew_0532at 603.528 kb on + strandat 603.528 kb on + strandat 603.711 kb on - strandat 604.062 kb on + strand, within Shew_0533at 604.080 kb on - strand, within Shew_0533at 604.462 kb on + strand, within Shew_0533

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM
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601,999 - Shew_0531 0.80 -0.1
602,191 - +0.9
602,362 - +1.5
602,363 - +2.4
602,879 - Shew_0532 0.27 -3.4
602,879 - Shew_0532 0.27 -0.5
602,982 + Shew_0532 0.37 -0.1
602,982 + Shew_0532 0.37 -0.6
602,990 - Shew_0532 0.38 +0.0
602,990 - Shew_0532 0.38 +2.8
603,018 + Shew_0532 0.41 -0.4
603,112 - Shew_0532 0.50 +0.8
603,523 + Shew_0532 0.90 -2.2
603,528 + -0.1
603,528 + -0.7
603,711 - +0.2
604,062 + Shew_0533 0.11 -0.5
604,080 - Shew_0533 0.11 +0.3
604,462 + Shew_0533 0.25 -0.0

Or see this region's nucleotide sequence