Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0301 and Shew_0302 are separated by 74 nucleotides Shew_0302 and Shew_0303 are separated by 106 nucleotides Shew_0303 and Shew_0304 are separated by 222 nucleotides Shew_0304 and Shew_0305 are separated by 240 nucleotides
Shew_0301: Shew_0301 - AsnC family transcriptional regulator (RefSeq), at 323,549 to 324,049
_0301
Shew_0302: Shew_0302 - phosphoesterase, PA-phosphatase related (RefSeq), at 324,124 to 324,891
_0302
Shew_0303: Shew_0303 - hypothetical protein (RefSeq), at 324,998 to 326,350
_0303
Shew_0304: Shew_0304 - hypothetical protein (RefSeq), at 326,573 to 326,833
_0304
Shew_0305: Shew_0305 - ATP-dependent DNA helicase Rep (RefSeq), at 327,074 to 329,086
_0305
Position (kb) 324
325
326
327 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 324.066 kb on + strand at 324.244 kb on + strand, within Shew_0302 at 324.271 kb on + strand, within Shew_0302 at 324.295 kb on + strand, within Shew_0302 at 324.334 kb on - strand, within Shew_0302 at 324.603 kb on + strand, within Shew_0302 at 324.713 kb on + strand, within Shew_0302 at 324.721 kb on - strand, within Shew_0302 at 324.744 kb on - strand, within Shew_0302 at 324.839 kb on + strand at 324.947 kb on - strand at 325.019 kb on - strand at 325.086 kb on - strand at 325.449 kb on + strand, within Shew_0303 at 325.449 kb on + strand, within Shew_0303 at 325.492 kb on + strand, within Shew_0303 at 325.640 kb on - strand, within Shew_0303 at 325.663 kb on + strand, within Shew_0303 at 325.666 kb on - strand, within Shew_0303 at 325.791 kb on - strand, within Shew_0303 at 325.931 kb on + strand, within Shew_0303 at 326.104 kb on - strand, within Shew_0303 at 326.128 kb on - strand, within Shew_0303 at 326.128 kb on - strand, within Shew_0303 at 326.184 kb on + strand, within Shew_0303 at 326.265 kb on - strand at 326.403 kb on - strand at 326.518 kb on - strand at 326.649 kb on + strand, within Shew_0304 at 326.764 kb on + strand, within Shew_0304 at 326.772 kb on - strand, within Shew_0304 at 326.934 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 324,066 + +0.2 324,244 + Shew_0302 0.16 -1.5 324,271 + Shew_0302 0.19 -0.8 324,295 + Shew_0302 0.22 -0.4 324,334 - Shew_0302 0.27 -0.2 324,603 + Shew_0302 0.62 -0.5 324,713 + Shew_0302 0.77 -1.0 324,721 - Shew_0302 0.78 -0.6 324,744 - Shew_0302 0.81 -0.1 324,839 + -1.5 324,947 - +0.1 325,019 - -1.2 325,086 - -0.2 325,449 + Shew_0303 0.33 -0.3 325,449 + Shew_0303 0.33 -1.0 325,492 + Shew_0303 0.37 +0.4 325,640 - Shew_0303 0.47 -0.2 325,663 + Shew_0303 0.49 -0.2 325,666 - Shew_0303 0.49 -0.3 325,791 - Shew_0303 0.59 -0.3 325,931 + Shew_0303 0.69 -0.9 326,104 - Shew_0303 0.82 +1.1 326,128 - Shew_0303 0.84 -3.4 326,128 - Shew_0303 0.84 +0.0 326,184 + Shew_0303 0.88 -0.2 326,265 - +0.2 326,403 - -0.2 326,518 - -4.5 326,649 + Shew_0304 0.29 -1.9 326,764 + Shew_0304 0.73 +0.2 326,772 - Shew_0304 0.76 +0.4 326,934 - +0.8
Or see this region's nucleotide sequence