Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0063 and Shew_0064 are separated by 20 nucleotides Shew_0064 and Shew_0065 are separated by 68 nucleotides
Shew_0063: Shew_0063 - molybdopterin oxidoreductase (RefSeq), at 75,104 to 77,959
_0063
Shew_0064: Shew_0064 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 77,980 to 78,549
_0064
Shew_0065: Shew_0065 - formate dehydrogenase, gamma subunit (RefSeq), at 78,618 to 79,610
_0065
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 76.994 kb on + strand, within Shew_0063 at 77.047 kb on + strand, within Shew_0063 at 77.060 kb on - strand, within Shew_0063 at 77.060 kb on - strand, within Shew_0063 at 77.060 kb on - strand, within Shew_0063 at 77.083 kb on - strand, within Shew_0063 at 77.156 kb on + strand, within Shew_0063 at 77.164 kb on - strand, within Shew_0063 at 77.256 kb on - strand, within Shew_0063 at 77.370 kb on + strand, within Shew_0063 at 77.608 kb on + strand, within Shew_0063 at 77.621 kb on - strand, within Shew_0063 at 77.751 kb on - strand at 77.794 kb on - strand at 77.882 kb on + strand at 77.928 kb on + strand at 78.067 kb on + strand, within Shew_0064 at 78.075 kb on - strand, within Shew_0064 at 78.138 kb on - strand, within Shew_0064 at 78.265 kb on + strand, within Shew_0064 at 78.265 kb on + strand, within Shew_0064 at 78.372 kb on - strand, within Shew_0064 at 78.519 kb on - strand at 78.568 kb on - strand at 78.579 kb on - strand at 78.712 kb on + strand at 78.817 kb on + strand, within Shew_0065 at 78.853 kb on + strand, within Shew_0065 at 79.008 kb on - strand, within Shew_0065 at 79.008 kb on - strand, within Shew_0065 at 79.038 kb on + strand, within Shew_0065 at 79.106 kb on + strand, within Shew_0065 at 79.114 kb on + strand, within Shew_0065 at 79.259 kb on + strand, within Shew_0065 at 79.267 kb on - strand, within Shew_0065 at 79.414 kb on + strand, within Shew_0065 at 79.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 76,994 + Shew_0063 0.66 +0.3 77,047 + Shew_0063 0.68 -0.9 77,060 - Shew_0063 0.68 +0.2 77,060 - Shew_0063 0.68 +0.8 77,060 - Shew_0063 0.68 +0.3 77,083 - Shew_0063 0.69 -0.2 77,156 + Shew_0063 0.72 +0.2 77,164 - Shew_0063 0.72 +0.0 77,256 - Shew_0063 0.75 -1.4 77,370 + Shew_0063 0.79 -3.1 77,608 + Shew_0063 0.88 -0.2 77,621 - Shew_0063 0.88 +0.1 77,751 - -0.3 77,794 - +0.2 77,882 + -0.4 77,928 + -0.5 78,067 + Shew_0064 0.15 +0.3 78,075 - Shew_0064 0.17 +0.3 78,138 - Shew_0064 0.28 +0.0 78,265 + Shew_0064 0.50 -0.1 78,265 + Shew_0064 0.50 -0.5 78,372 - Shew_0064 0.69 -0.9 78,519 - +0.9 78,568 - -0.3 78,579 - +0.2 78,712 + -0.6 78,817 + Shew_0065 0.20 -3.4 78,853 + Shew_0065 0.24 -0.6 79,008 - Shew_0065 0.39 -0.3 79,008 - Shew_0065 0.39 -1.9 79,038 + Shew_0065 0.42 -0.4 79,106 + Shew_0065 0.49 -0.1 79,114 + Shew_0065 0.50 -0.4 79,259 + Shew_0065 0.65 -0.5 79,267 - Shew_0065 0.65 +0.5 79,414 + Shew_0065 0.80 +0.4 79,538 - -0.0
Or see this region's nucleotide sequence