Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0045 and Shew_0046 are separated by 181 nucleotides Shew_0046 and Shew_0047 are separated by 10 nucleotides Shew_0047 and Shew_0048 are separated by 118 nucleotides
Shew_0045: Shew_0045 - RND family efflux transporter MFP subunit (RefSeq), at 54,917 to 55,987
_0045
Shew_0046: Shew_0046 - molybdenum cofactor synthesis domain-containing protein (RefSeq), at 56,169 to 57,416
_0046
Shew_0047: Shew_0047 - molybdopterin biosynthesis protein MoeB (RefSeq), at 57,427 to 58,194
_0047
Shew_0048: Shew_0048 - short chain dehydrogenase (RefSeq), at 58,313 to 59,020
_0048
Position (kb) 56
57
58 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 55.356 kb on - strand, within Shew_0045 at 55.560 kb on + strand, within Shew_0045 at 55.648 kb on - strand, within Shew_0045 at 55.746 kb on + strand, within Shew_0045 at 55.749 kb on + strand, within Shew_0045 at 55.749 kb on + strand, within Shew_0045 at 55.749 kb on + strand, within Shew_0045 at 55.757 kb on - strand, within Shew_0045 at 55.798 kb on + strand, within Shew_0045 at 55.891 kb on - strand at 56.100 kb on - strand at 56.100 kb on - strand at 56.418 kb on + strand, within Shew_0046 at 56.517 kb on + strand, within Shew_0046 at 56.698 kb on + strand, within Shew_0046 at 56.717 kb on + strand, within Shew_0046 at 56.725 kb on - strand, within Shew_0046 at 57.185 kb on + strand, within Shew_0046 at 57.185 kb on + strand, within Shew_0046 at 57.185 kb on + strand, within Shew_0046 at 57.193 kb on - strand, within Shew_0046 at 57.193 kb on - strand, within Shew_0046 at 57.285 kb on + strand, within Shew_0046 at 57.285 kb on + strand, within Shew_0046 at 57.300 kb on - strand at 57.361 kb on - strand at 57.390 kb on - strand at 57.400 kb on - strand at 57.500 kb on + strand at 57.525 kb on - strand, within Shew_0047 at 57.565 kb on + strand, within Shew_0047 at 57.696 kb on + strand, within Shew_0047 at 57.704 kb on - strand, within Shew_0047 at 57.704 kb on - strand, within Shew_0047 at 57.752 kb on - strand, within Shew_0047 at 58.002 kb on - strand, within Shew_0047 at 58.399 kb on - strand, within Shew_0048
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 55,356 - Shew_0045 0.41 -0.5 55,560 + Shew_0045 0.60 -0.8 55,648 - Shew_0045 0.68 -3.1 55,746 + Shew_0045 0.77 +0.4 55,749 + Shew_0045 0.78 -0.2 55,749 + Shew_0045 0.78 -1.5 55,749 + Shew_0045 0.78 -0.1 55,757 - Shew_0045 0.78 -5.2 55,798 + Shew_0045 0.82 +0.7 55,891 - +0.7 56,100 - +0.8 56,100 - +0.5 56,418 + Shew_0046 0.20 +0.5 56,517 + Shew_0046 0.28 +0.6 56,698 + Shew_0046 0.42 -0.3 56,717 + Shew_0046 0.44 +0.8 56,725 - Shew_0046 0.45 +1.0 57,185 + Shew_0046 0.81 +0.3 57,185 + Shew_0046 0.81 +1.4 57,185 + Shew_0046 0.81 +0.4 57,193 - Shew_0046 0.82 +1.4 57,193 - Shew_0046 0.82 +0.0 57,285 + Shew_0046 0.89 +1.3 57,285 + Shew_0046 0.89 +1.1 57,300 - +0.7 57,361 - -0.3 57,390 - -0.3 57,400 - +0.7 57,500 + +0.2 57,525 - Shew_0047 0.13 +0.3 57,565 + Shew_0047 0.18 -0.2 57,696 + Shew_0047 0.35 +1.3 57,704 - Shew_0047 0.36 -2.8 57,704 - Shew_0047 0.36 +0.2 57,752 - Shew_0047 0.42 +0.7 58,002 - Shew_0047 0.75 +0.3 58,399 - Shew_0048 0.12 -1.2
Or see this region's nucleotide sequence