Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0552

Experiment: MoLS4 with L-Serine (N), without Molybdate/Tungstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlivG and livF overlap by 8 nucleotideslivF and DVU0552 are separated by 201 nucleotidesDVU0552 and DVU0554 are separated by 325 nucleotides DVU0550: livG - high-affinity branched-chain amino acid ABC transporter, ATP binding protein (TIGR), at 620,377 to 621,165 livG DVU0551: livF - high-affinity branched-chain amino acid ABC transporter ATP-binding protein (TIGR), at 621,158 to 621,862 livF DVU0552: DVU0552 - conserved hypothetical protein (TIGR), at 622,064 to 623,029 DVU0552 DVU0554: DVU0554 - NAD-dependent epimerase/dehydratase family protein (TIGR), at 623,355 to 624,293 DVU0554 Position (kb) 622 623 624Strain fitness (log2 ratio) -2 -1 0 1at 621.098 kb on + strandat 621.101 kb on - strandat 621.130 kb on + strandat 621.167 kb on - strandat 621.167 kb on - strandat 621.177 kb on - strandat 621.177 kb on - strandat 621.221 kb on - strandat 621.280 kb on - strand, within livFat 621.280 kb on - strand, within livFat 621.287 kb on - strand, within livFat 621.311 kb on + strand, within livFat 621.321 kb on + strand, within livFat 621.461 kb on + strand, within livFat 621.552 kb on + strand, within livFat 621.552 kb on + strand, within livFat 621.555 kb on - strand, within livFat 621.756 kb on - strand, within livFat 621.930 kb on + strandat 621.967 kb on - strandat 621.999 kb on - strandat 622.005 kb on - strandat 622.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N), without Molybdate/Tungstate
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621,098 + -0.9
621,101 - -1.0
621,130 + -0.8
621,167 - -0.8
621,167 - -1.5
621,177 - -0.7
621,177 - -1.1
621,221 - +0.0
621,280 - livF DVU0551 0.17 -0.4
621,280 - livF DVU0551 0.17 -2.4
621,287 - livF DVU0551 0.18 -0.7
621,311 + livF DVU0551 0.22 -1.3
621,321 + livF DVU0551 0.23 -1.5
621,461 + livF DVU0551 0.43 -1.0
621,552 + livF DVU0551 0.56 -1.2
621,552 + livF DVU0551 0.56 -0.5
621,555 - livF DVU0551 0.56 -2.5
621,756 - livF DVU0551 0.85 -0.1
621,930 + -0.7
621,967 - -0.3
621,999 - +0.3
622,005 - +0.6
622,010 - -0.5

Or see this region's nucleotide sequence