Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4146

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4145 and Dshi_4146 are separated by 21 nucleotidesDshi_4146 and Dshi_4147 are separated by 188 nucleotides Dshi_4145: Dshi_4145 - glycosyl transferase family 2 (RefSeq), at 77,191 to 78,195 _4145 Dshi_4146: Dshi_4146 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (RefSeq), at 78,217 to 79,641 _4146 Dshi_4147: Dshi_4147 - glycosyl transferase family 2 (RefSeq), at 79,830 to 80,822 _4147 Position (kb) 78 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 77.309 kb on - strand, within Dshi_4145at 77.314 kb on - strand, within Dshi_4145at 77.359 kb on - strand, within Dshi_4145at 77.373 kb on - strand, within Dshi_4145at 77.476 kb on + strand, within Dshi_4145at 77.486 kb on + strand, within Dshi_4145at 77.502 kb on + strand, within Dshi_4145at 77.508 kb on - strand, within Dshi_4145at 77.653 kb on - strand, within Dshi_4145at 77.690 kb on - strand, within Dshi_4145at 77.698 kb on + strand, within Dshi_4145at 77.711 kb on + strand, within Dshi_4145at 77.712 kb on - strand, within Dshi_4145at 77.860 kb on - strand, within Dshi_4145at 77.889 kb on - strand, within Dshi_4145at 77.891 kb on - strand, within Dshi_4145at 78.038 kb on + strandat 78.108 kb on + strandat 78.182 kb on + strandat 78.313 kb on - strandat 78.363 kb on - strand, within Dshi_4146at 78.387 kb on - strand, within Dshi_4146at 78.550 kb on - strand, within Dshi_4146at 78.577 kb on - strand, within Dshi_4146at 78.705 kb on + strand, within Dshi_4146at 78.907 kb on - strand, within Dshi_4146at 79.241 kb on + strand, within Dshi_4146at 79.502 kb on + strandat 79.547 kb on + strandat 79.623 kb on + strandat 79.659 kb on + strandat 79.673 kb on + strandat 79.782 kb on + strandat 79.782 kb on + strandat 79.782 kb on + strandat 79.816 kb on - strandat 79.870 kb on - strandat 79.911 kb on - strandat 80.070 kb on + strand, within Dshi_4147at 80.108 kb on - strand, within Dshi_4147at 80.216 kb on - strand, within Dshi_4147at 80.297 kb on - strand, within Dshi_4147

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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77,309 - Dshi_4145 0.12 -0.6
77,314 - Dshi_4145 0.12 -0.6
77,359 - Dshi_4145 0.17 -0.6
77,373 - Dshi_4145 0.18 +1.0
77,476 + Dshi_4145 0.28 +0.2
77,486 + Dshi_4145 0.29 -1.0
77,502 + Dshi_4145 0.31 -0.2
77,508 - Dshi_4145 0.32 +0.2
77,653 - Dshi_4145 0.46 -0.6
77,690 - Dshi_4145 0.50 +0.2
77,698 + Dshi_4145 0.50 +0.0
77,711 + Dshi_4145 0.52 -1.2
77,712 - Dshi_4145 0.52 -0.8
77,860 - Dshi_4145 0.67 +0.4
77,889 - Dshi_4145 0.69 -0.6
77,891 - Dshi_4145 0.70 -0.3
78,038 + +0.7
78,108 + -2.8
78,182 + -1.2
78,313 - -0.6
78,363 - Dshi_4146 0.10 +2.6
78,387 - Dshi_4146 0.12 -1.5
78,550 - Dshi_4146 0.23 -0.0
78,577 - Dshi_4146 0.25 +0.9
78,705 + Dshi_4146 0.34 +0.4
78,907 - Dshi_4146 0.48 -1.0
79,241 + Dshi_4146 0.72 +1.2
79,502 + +0.2
79,547 + -0.6
79,623 + -0.9
79,659 + -0.4
79,673 + +1.0
79,782 + +1.0
79,782 + -0.2
79,782 + -1.4
79,816 - -0.2
79,870 - +0.8
79,911 - +2.0
80,070 + Dshi_4147 0.24 +1.9
80,108 - Dshi_4147 0.28 +2.9
80,216 - Dshi_4147 0.39 +2.0
80,297 - Dshi_4147 0.47 +2.3

Or see this region's nucleotide sequence