Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2958

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2957 and Dshi_2958 are separated by 245 nucleotidesDshi_2958 and Dshi_2959 overlap by 4 nucleotides Dshi_2957: Dshi_2957 - DNA polymerase III, alpha subunit (RefSeq), at 3,117,972 to 3,121,466 _2957 Dshi_2958: Dshi_2958 - Xanthine dehydrogenase (EC 1.17.1.4) (from data), at 3,121,712 to 3,123,163 _2958 Dshi_2959: Dshi_2959 - Xanthine dehydrogenase (EC 1.17.1.4) (from data), at 3,123,160 to 3,125,505 _2959 Position (kb) 3121 3122 3123 3124Strain fitness (log2 ratio) -2 -1 0 1 2at 3121.553 kb on - strandat 3121.582 kb on - strandat 3121.655 kb on - strandat 3121.656 kb on + strandat 3121.673 kb on + strandat 3121.681 kb on - strandat 3121.813 kb on - strandat 3121.815 kb on + strandat 3121.947 kb on - strand, within Dshi_2958at 3122.164 kb on - strand, within Dshi_2958at 3122.184 kb on + strand, within Dshi_2958at 3122.303 kb on + strand, within Dshi_2958at 3122.343 kb on + strand, within Dshi_2958at 3122.404 kb on + strand, within Dshi_2958at 3122.472 kb on - strand, within Dshi_2958at 3122.498 kb on - strand, within Dshi_2958at 3122.538 kb on - strand, within Dshi_2958at 3122.685 kb on + strand, within Dshi_2958at 3122.687 kb on - strand, within Dshi_2958at 3122.687 kb on - strand, within Dshi_2958at 3122.687 kb on - strand, within Dshi_2958at 3122.695 kb on + strand, within Dshi_2958at 3122.703 kb on - strand, within Dshi_2958at 3122.710 kb on - strand, within Dshi_2958at 3122.880 kb on + strand, within Dshi_2958at 3122.953 kb on + strand, within Dshi_2958at 3122.980 kb on - strand, within Dshi_2958at 3122.980 kb on - strand, within Dshi_2958at 3123.001 kb on + strand, within Dshi_2958at 3123.079 kb on + strandat 3123.235 kb on + strandat 3123.260 kb on + strandat 3123.266 kb on + strandat 3123.405 kb on - strand, within Dshi_2959at 3123.425 kb on - strand, within Dshi_2959at 3123.437 kb on + strand, within Dshi_2959at 3123.486 kb on + strand, within Dshi_2959at 3123.599 kb on - strand, within Dshi_2959at 3123.611 kb on - strand, within Dshi_2959at 3123.633 kb on + strand, within Dshi_2959at 3123.691 kb on + strand, within Dshi_2959at 3123.823 kb on - strand, within Dshi_2959at 3123.859 kb on + strand, within Dshi_2959at 3123.871 kb on + strand, within Dshi_2959

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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3,121,553 - -0.8
3,121,582 - -1.0
3,121,655 - +0.7
3,121,656 + +0.0
3,121,673 + +0.6
3,121,681 - +0.6
3,121,813 - +0.4
3,121,815 + +1.0
3,121,947 - Dshi_2958 0.16 -0.6
3,122,164 - Dshi_2958 0.31 +1.2
3,122,184 + Dshi_2958 0.33 +0.5
3,122,303 + Dshi_2958 0.41 -1.0
3,122,343 + Dshi_2958 0.43 +1.1
3,122,404 + Dshi_2958 0.48 +0.8
3,122,472 - Dshi_2958 0.52 +1.9
3,122,498 - Dshi_2958 0.54 +1.2
3,122,538 - Dshi_2958 0.57 +0.4
3,122,685 + Dshi_2958 0.67 +0.3
3,122,687 - Dshi_2958 0.67 +0.6
3,122,687 - Dshi_2958 0.67 -0.4
3,122,687 - Dshi_2958 0.67 +0.6
3,122,695 + Dshi_2958 0.68 -0.1
3,122,703 - Dshi_2958 0.68 -0.8
3,122,710 - Dshi_2958 0.69 -0.7
3,122,880 + Dshi_2958 0.80 +1.3
3,122,953 + Dshi_2958 0.85 +0.5
3,122,980 - Dshi_2958 0.87 +0.3
3,122,980 - Dshi_2958 0.87 +1.1
3,123,001 + Dshi_2958 0.89 +0.3
3,123,079 + +1.0
3,123,235 + +1.9
3,123,260 + -2.2
3,123,266 + +0.1
3,123,405 - Dshi_2959 0.10 -0.1
3,123,425 - Dshi_2959 0.11 +1.3
3,123,437 + Dshi_2959 0.12 -0.2
3,123,486 + Dshi_2959 0.14 -0.2
3,123,599 - Dshi_2959 0.19 +0.1
3,123,611 - Dshi_2959 0.19 +2.2
3,123,633 + Dshi_2959 0.20 +0.1
3,123,691 + Dshi_2959 0.23 -0.1
3,123,823 - Dshi_2959 0.28 +0.4
3,123,859 + Dshi_2959 0.30 -0.1
3,123,871 + Dshi_2959 0.30 +0.3

Or see this region's nucleotide sequence