Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2957

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2955 and Dshi_2956 are separated by 88 nucleotidesDshi_2956 and Dshi_2957 are separated by 226 nucleotidesDshi_2957 and Dshi_2958 are separated by 245 nucleotides Dshi_2955: Dshi_2955 - histidyl-tRNA synthetase (RefSeq), at 3,115,954 to 3,117,447 _2955 Dshi_2956: Dshi_2956 - SlyX family protein (RefSeq), at 3,117,536 to 3,117,745 _2956 Dshi_2957: Dshi_2957 - DNA polymerase III, alpha subunit (RefSeq), at 3,117,972 to 3,121,466 _2957 Dshi_2958: Dshi_2958 - Xanthine dehydrogenase (EC 1.17.1.4) (from data), at 3,121,712 to 3,123,163 _2958 Position (kb) 3117 3118 3119 3120 3121 3122Strain fitness (log2 ratio) -1 0 1at 3117.532 kb on + strandat 3117.542 kb on - strandat 3117.542 kb on - strandat 3117.791 kb on - strandat 3117.824 kb on - strandat 3121.553 kb on - strandat 3121.582 kb on - strandat 3121.655 kb on - strandat 3121.656 kb on + strandat 3121.673 kb on + strandat 3121.681 kb on - strandat 3121.813 kb on - strandat 3121.815 kb on + strandat 3121.947 kb on - strand, within Dshi_2958at 3122.164 kb on - strand, within Dshi_2958at 3122.184 kb on + strand, within Dshi_2958at 3122.303 kb on + strand, within Dshi_2958at 3122.343 kb on + strand, within Dshi_2958at 3122.404 kb on + strand, within Dshi_2958

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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3,117,532 + -1.0
3,117,542 - -1.2
3,117,542 - -0.4
3,117,791 - +0.3
3,117,824 - +0.2
3,121,553 - -0.8
3,121,582 - -1.0
3,121,655 - +0.7
3,121,656 + +0.0
3,121,673 + +0.6
3,121,681 - +0.6
3,121,813 - +0.4
3,121,815 + +1.0
3,121,947 - Dshi_2958 0.16 -0.6
3,122,164 - Dshi_2958 0.31 +1.2
3,122,184 + Dshi_2958 0.33 +0.5
3,122,303 + Dshi_2958 0.41 -1.0
3,122,343 + Dshi_2958 0.43 +1.1
3,122,404 + Dshi_2958 0.48 +0.8

Or see this region's nucleotide sequence