Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2723

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2721 and Dshi_2722 are separated by 84 nucleotidesDshi_2722 and Dshi_2723 are separated by 213 nucleotidesDshi_2723 and Dshi_2724 overlap by 4 nucleotidesDshi_2724 and Dshi_2725 are separated by 23 nucleotides Dshi_2721: Dshi_2721 - peptidase M24 (RefSeq), at 2,882,651 to 2,884,507 _2721 Dshi_2722: Dshi_2722 - protein of unknown function DUF427 (RefSeq), at 2,884,592 to 2,884,933 _2722 Dshi_2723: Dshi_2723 - Intracellular septation protein A (RefSeq), at 2,885,147 to 2,885,776 _2723 Dshi_2724: Dshi_2724 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,885,773 to 2,886,675 _2724 Dshi_2725: Dshi_2725 - signal recognition particle-docking protein FtsY (RefSeq), at 2,886,699 to 2,888,198 _2725 Position (kb) 2885 2886Strain fitness (log2 ratio) -2 -1 0 1at 2884.203 kb on - strand, within Dshi_2721at 2884.345 kb on + strandat 2884.549 kb on + strandat 2884.635 kb on - strand, within Dshi_2722at 2884.650 kb on + strand, within Dshi_2722at 2884.687 kb on + strand, within Dshi_2722at 2884.754 kb on - strand, within Dshi_2722at 2884.778 kb on - strand, within Dshi_2722at 2885.017 kb on - strandat 2885.818 kb on + strandat 2885.826 kb on - strandat 2886.005 kb on - strand, within Dshi_2724at 2886.081 kb on - strand, within Dshi_2724at 2886.171 kb on - strand, within Dshi_2724at 2886.213 kb on - strand, within Dshi_2724at 2886.283 kb on - strand, within Dshi_2724at 2886.340 kb on - strand, within Dshi_2724at 2886.373 kb on - strand, within Dshi_2724at 2886.397 kb on + strand, within Dshi_2724at 2886.476 kb on - strand, within Dshi_2724at 2886.517 kb on - strand, within Dshi_2724at 2886.687 kb on + strandat 2886.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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2,884,203 - Dshi_2721 0.84 +0.5
2,884,345 + +0.7
2,884,549 + -1.1
2,884,635 - Dshi_2722 0.13 +0.8
2,884,650 + Dshi_2722 0.17 +0.5
2,884,687 + Dshi_2722 0.28 -0.2
2,884,754 - Dshi_2722 0.47 -0.3
2,884,778 - Dshi_2722 0.54 -0.3
2,885,017 - -0.3
2,885,818 + -0.1
2,885,826 - -0.4
2,886,005 - Dshi_2724 0.26 +0.9
2,886,081 - Dshi_2724 0.34 +1.1
2,886,171 - Dshi_2724 0.44 +1.1
2,886,213 - Dshi_2724 0.49 +0.7
2,886,283 - Dshi_2724 0.56 -0.0
2,886,340 - Dshi_2724 0.63 +0.2
2,886,373 - Dshi_2724 0.66 -0.2
2,886,397 + Dshi_2724 0.69 -2.1
2,886,476 - Dshi_2724 0.78 +0.4
2,886,517 - Dshi_2724 0.82 -0.5
2,886,687 + -0.6
2,886,715 - -0.3

Or see this region's nucleotide sequence