Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1301

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1300 and Dshi_1301 are separated by 111 nucleotidesDshi_1301 and Dshi_1302 overlap by 4 nucleotidesDshi_1302 and Dshi_1303 overlap by 4 nucleotides Dshi_1300: Dshi_1300 - Propionyl-CoA carboxylase (RefSeq), at 1,353,609 to 1,355,213 _1300 Dshi_1301: Dshi_1301 - Carbamoyl-phosphate synthase L chain ATP-binding (RefSeq), at 1,355,325 to 1,357,310 _1301 Dshi_1302: Dshi_1302 - Glutathione S-transferase domain (RefSeq), at 1,357,307 to 1,357,975 _1302 Dshi_1303: Dshi_1303 - Hydroxymethylglutaryl-CoA lyase (RefSeq), at 1,357,972 to 1,358,835 _1303 Position (kb) 1355 1356 1357 1358Strain fitness (log2 ratio) -1 0 1 2at 1354.540 kb on - strand, within Dshi_1300at 1354.551 kb on - strand, within Dshi_1300at 1354.708 kb on - strand, within Dshi_1300at 1354.953 kb on - strand, within Dshi_1300at 1354.964 kb on - strand, within Dshi_1300at 1355.057 kb on - strandat 1355.096 kb on + strandat 1355.137 kb on - strandat 1355.163 kb on + strandat 1355.312 kb on - strandat 1355.383 kb on + strandat 1355.527 kb on - strand, within Dshi_1301at 1355.545 kb on + strand, within Dshi_1301at 1355.646 kb on + strand, within Dshi_1301at 1355.792 kb on + strand, within Dshi_1301at 1355.800 kb on - strand, within Dshi_1301at 1355.971 kb on - strand, within Dshi_1301at 1355.982 kb on - strand, within Dshi_1301at 1356.226 kb on - strand, within Dshi_1301at 1356.226 kb on - strand, within Dshi_1301at 1356.301 kb on - strand, within Dshi_1301at 1356.737 kb on + strand, within Dshi_1301at 1357.076 kb on + strand, within Dshi_1301at 1357.220 kb on + strandat 1357.244 kb on - strandat 1357.491 kb on - strand, within Dshi_1302at 1357.528 kb on + strand, within Dshi_1302at 1357.528 kb on + strand, within Dshi_1302at 1357.679 kb on + strand, within Dshi_1302at 1357.689 kb on + strand, within Dshi_1302at 1357.766 kb on + strand, within Dshi_1302at 1357.803 kb on - strand, within Dshi_1302at 1358.158 kb on - strand, within Dshi_1303at 1358.299 kb on + strand, within Dshi_1303

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,354,540 - Dshi_1300 0.58 -0.3
1,354,551 - Dshi_1300 0.59 +0.1
1,354,708 - Dshi_1300 0.68 +0.9
1,354,953 - Dshi_1300 0.84 +0.9
1,354,964 - Dshi_1300 0.84 -1.2
1,355,057 - -0.2
1,355,096 + -1.0
1,355,137 - -1.1
1,355,163 + -1.2
1,355,312 - -0.7
1,355,383 + -0.7
1,355,527 - Dshi_1301 0.10 +0.6
1,355,545 + Dshi_1301 0.11 +0.3
1,355,646 + Dshi_1301 0.16 -0.2
1,355,792 + Dshi_1301 0.24 +0.2
1,355,800 - Dshi_1301 0.24 +0.4
1,355,971 - Dshi_1301 0.33 +0.5
1,355,982 - Dshi_1301 0.33 -1.1
1,356,226 - Dshi_1301 0.45 -0.9
1,356,226 - Dshi_1301 0.45 -0.1
1,356,301 - Dshi_1301 0.49 +0.8
1,356,737 + Dshi_1301 0.71 +1.6
1,357,076 + Dshi_1301 0.88 -0.0
1,357,220 + +1.3
1,357,244 - -0.6
1,357,491 - Dshi_1302 0.28 +0.7
1,357,528 + Dshi_1302 0.33 +0.5
1,357,528 + Dshi_1302 0.33 +0.6
1,357,679 + Dshi_1302 0.56 +0.2
1,357,689 + Dshi_1302 0.57 +2.1
1,357,766 + Dshi_1302 0.69 +0.1
1,357,803 - Dshi_1302 0.74 -1.0
1,358,158 - Dshi_1303 0.22 +1.7
1,358,299 + Dshi_1303 0.38 +0.8

Or see this region's nucleotide sequence