Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4179

Experiment: BHIS with Dimethyl Sulfoxide 9 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Dimethyl Sulfoxide 9 vol%
5,504,251	+		BT4178	0.85	-1.6
5,504,327	+		BT4178	0.87	-1.6
5,504,396	+		BT4178	0.89	-1.0
5,504,396	+		BT4178	0.89	+1.8
5,504,450	-		BT4178	0.90	+0.3
5,504,450	-		BT4178	0.90	+0.2
5,504,462	+				-0.8
5,504,463	-				-0.4
5,504,520	-				+0.5
5,504,561	-				-1.6
5,504,594	+				+1.5
5,504,624	-				+0.6
5,504,624	-				-0.7
5,504,695	+				+1.1
5,504,761	-				-0.1
5,504,792	+				-2.2
5,504,890	+				-1.1
5,504,957	-				-1.6
5,504,970	-				-1.5
5,505,016	-				+0.1
5,505,092	+				-2.1
5,505,127	+				-2.3
5,505,128	-				-0.8
5,505,130	+				+1.6
5,505,167	+				-2.5
5,505,212	+				-0.3
5,505,212	+				+1.5
5,505,213	-				+1.7
5,505,213	-				+0.8
5,505,216	+				-0.6
5,505,216	+				-0.3
5,505,216	+				-1.8
5,505,231	+				+0.7
5,505,238	-				-1.9
5,505,238	-				+1.7
5,505,270	-				+0.8
5,505,308	+				-2.3
5,505,316	-				+0.3
5,505,317	+				+0.5
5,505,379	-		BT4179	0.11	-3.3
5,505,412	+		BT4179	0.13	+1.1
5,505,428	+		BT4179	0.14	-0.3
5,505,483	-		BT4179	0.18	+0.8
5,505,483	-		BT4179	0.18	+1.3
5,505,489	-		BT4179	0.18	+0.5
5,505,515	-		BT4179	0.19	-1.8
5,505,545	+		BT4179	0.21	-2.2
5,505,579	+		BT4179	0.23	+1.1
5,505,621	+		BT4179	0.26	+0.2
5,505,669	+		BT4179	0.29	+0.8
5,505,727	+		BT4179	0.33	-3.1
5,505,761	+		BT4179	0.35	+2.1
5,505,807	-		BT4179	0.37	-0.6
5,505,845	-		BT4179	0.40	+0.9
5,505,867	-		BT4179	0.41	-2.0
5,505,904	-		BT4179	0.43	-2.6
5,505,943	+		BT4179	0.46	+3.1
5,505,943	+		BT4179	0.46	+1.5
5,505,944	-		BT4179	0.46	+0.5
5,505,945	+		BT4179	0.46	-0.1
5,505,957	+		BT4179	0.47	-0.5
5,505,958	-		BT4179	0.47	-3.8
5,505,989	+		BT4179	0.49	-1.7
5,506,061	+		BT4179	0.53	+1.5
5,506,086	-		BT4179	0.55	-1.1
5,506,188	-		BT4179	0.61	+1.5
5,506,250	+		BT4179	0.65	-3.0
5,506,251	-		BT4179	0.65	-0.4
5,506,254	+		BT4179	0.65	+0.4
5,506,262	+		BT4179	0.65	-0.8
5,506,280	+				+1.5
5,506,298	+		BT4179	0.68	-0.6
5,506,299	-		BT4179	0.68	-0.9
5,506,303	-		BT4179	0.68	-2.0
5,506,325	+		BT4179	0.69	-0.1
5,506,326	-		BT4179	0.69	+0.0
5,506,448	+		BT4179	0.77	-0.8
5,506,448	+		BT4179	0.77	+0.3
5,506,529	+		BT4179	0.82	-2.4
5,506,549	+		BT4179	0.83	-1.3
5,506,575	+		BT4179	0.85	+1.1
5,506,575	+		BT4179	0.85	+1.5
5,506,576	-		BT4179	0.85	+1.5
5,506,597	+		BT4179	0.86	-2.6
5,506,597	+		BT4179	0.86	-2.9
5,506,659	-		BT4179	0.90	-1.3
5,506,707	-				-4.2
5,506,707	-				+0.6
5,506,745	-				-1.3
5,506,887	+				-0.1
5,506,888	-				-2.1
5,506,971	-		BT4180	0.12	-1.1
5,507,033	-		BT4180	0.20	-0.1
5,507,037	+		BT4180	0.21	-3.1
5,507,046	+		BT4180	0.22	-0.5
5,507,046	+		BT4180	0.22	-1.2
5,507,047	-		BT4180	0.22	-0.9
5,507,047	-		BT4180	0.22	-3.8
5,507,113	-		BT4180	0.30	-1.6
5,507,126	-		BT4180	0.32	-3.2
5,507,126	-		BT4180	0.32	-1.3
5,507,150	+		BT4180	0.35	-0.2
5,507,151	-		BT4180	0.35	-1.0
5,507,306	+		BT4180	0.54	-2.4
5,507,306	+		BT4180	0.54	-2.7
5,507,306	+		BT4180	0.54	-2.8
5,507,307	-		BT4180	0.54	-1.5
5,507,372	-		BT4180	0.62	-0.3
5,507,442	+		BT4180	0.71	+1.8
5,507,451	+		BT4180	0.72	-0.8
5,507,481	-		BT4180	0.76	+1.5
5,507,506	+		BT4180	0.79	-1.6
5,507,624	-				+0.5
5,507,645	+				-2.7
5,507,690	+				+0.2
5,507,712	+				-0.6
5,507,712	+				-0.9
5,507,713	-				-2.8
5,507,715	-				-2.4
5,507,718	+				-0.1
5,507,719	-				+1.1
5,507,719	-				+0.4
5,507,719	-				-2.5
5,507,726	-				+0.7
5,507,726	-				-1.6
5,507,800	+				+0.8
5,507,814	-				+0.2