Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5059

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_5057 and Psyr_5058 overlap by 4 nucleotidesPsyr_5058 and Psyr_5059 are separated by 15 nucleotidesPsyr_5059 and Psyr_5060 are separated by 152 nucleotides Psyr_5057: Psyr_5057 - negative transcriptional regulator, at 6,000,253 to 6,000,891 _5057 Psyr_5058: Psyr_5058 - GCN5-related N-acetyltransferase, at 6,000,888 to 6,001,334 _5058 Psyr_5059: Psyr_5059 - GCN5-related N-acetyltransferase, at 6,001,350 to 6,002,018 _5059 Psyr_5060: Psyr_5060 - Oxaloacetate decarboxylase, alpha subunit, at 6,002,171 to 6,003,979 _5060 Position (kb) 6001 6002 6003Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6000.404 kb on - strand, within Psyr_5057at 6000.404 kb on - strand, within Psyr_5057at 6000.416 kb on - strand, within Psyr_5057at 6000.502 kb on + strand, within Psyr_5057at 6000.502 kb on + strand, within Psyr_5057at 6000.502 kb on + strand, within Psyr_5057at 6000.502 kb on + strand, within Psyr_5057at 6000.503 kb on - strand, within Psyr_5057at 6000.503 kb on - strand, within Psyr_5057at 6000.503 kb on - strand, within Psyr_5057at 6000.503 kb on - strand, within Psyr_5057at 6000.503 kb on - strand, within Psyr_5057at 6000.503 kb on - strand, within Psyr_5057at 6000.520 kb on + strand, within Psyr_5057at 6000.521 kb on - strand, within Psyr_5057at 6000.565 kb on + strand, within Psyr_5057at 6000.565 kb on + strand, within Psyr_5057at 6000.565 kb on + strand, within Psyr_5057at 6000.565 kb on + strand, within Psyr_5057at 6000.565 kb on + strand, within Psyr_5057at 6000.565 kb on + strand, within Psyr_5057at 6000.565 kb on + strand, within Psyr_5057at 6000.565 kb on + strand, within Psyr_5057at 6000.565 kb on + strand, within Psyr_5057at 6000.565 kb on + strand, within Psyr_5057at 6000.565 kb on + strand, within Psyr_5057at 6000.565 kb on + strand, within Psyr_5057at 6000.566 kb on - strand, within Psyr_5057at 6000.566 kb on - strand, within Psyr_5057at 6000.566 kb on - strand, within Psyr_5057at 6000.566 kb on - strand, within Psyr_5057at 6000.566 kb on - strand, within Psyr_5057at 6000.566 kb on - strand, within Psyr_5057at 6000.566 kb on - strand, within Psyr_5057at 6000.566 kb on - strand, within Psyr_5057at 6000.566 kb on - strand, within Psyr_5057at 6000.566 kb on - strand, within Psyr_5057at 6000.583 kb on + strand, within Psyr_5057at 6000.584 kb on - strand, within Psyr_5057at 6000.584 kb on - strand, within Psyr_5057at 6000.703 kb on + strand, within Psyr_5057at 6000.703 kb on + strand, within Psyr_5057at 6000.703 kb on + strand, within Psyr_5057at 6000.703 kb on + strand, within Psyr_5057at 6000.703 kb on + strand, within Psyr_5057at 6000.703 kb on + strand, within Psyr_5057at 6000.703 kb on + strand, within Psyr_5057at 6000.703 kb on + strand, within Psyr_5057at 6000.704 kb on - strand, within Psyr_5057at 6000.704 kb on - strand, within Psyr_5057at 6000.704 kb on - strand, within Psyr_5057at 6000.704 kb on - strand, within Psyr_5057at 6000.704 kb on - strand, within Psyr_5057at 6000.704 kb on - strand, within Psyr_5057at 6000.957 kb on + strand, within Psyr_5058at 6000.957 kb on + strand, within Psyr_5058at 6000.958 kb on - strand, within Psyr_5058at 6000.958 kb on - strand, within Psyr_5058at 6000.969 kb on + strand, within Psyr_5058at 6000.969 kb on + strand, within Psyr_5058at 6000.969 kb on + strand, within Psyr_5058at 6001.020 kb on - strand, within Psyr_5058at 6001.095 kb on + strand, within Psyr_5058at 6001.095 kb on + strand, within Psyr_5058at 6001.095 kb on + strand, within Psyr_5058at 6001.095 kb on + strand, within Psyr_5058at 6001.095 kb on + strand, within Psyr_5058at 6001.095 kb on + strand, within Psyr_5058at 6001.095 kb on + strand, within Psyr_5058at 6001.095 kb on + strand, within Psyr_5058at 6001.096 kb on - strand, within Psyr_5058at 6001.096 kb on - strand, within Psyr_5058at 6001.096 kb on - strand, within Psyr_5058at 6001.096 kb on - strand, within Psyr_5058at 6001.132 kb on - strand, within Psyr_5058at 6001.203 kb on + strand, within Psyr_5058at 6001.203 kb on + strand, within Psyr_5058at 6001.282 kb on - strand, within Psyr_5058at 6001.282 kb on - strand, within Psyr_5058at 6001.312 kb on + strandat 6001.312 kb on + strandat 6001.312 kb on + strandat 6001.312 kb on + strandat 6001.312 kb on + strandat 6001.313 kb on - strandat 6001.313 kb on - strandat 6001.313 kb on - strandat 6001.313 kb on - strandat 6001.313 kb on - strandat 6001.400 kb on + strandat 6001.401 kb on - strandat 6001.401 kb on - strandat 6001.510 kb on - strand, within Psyr_5059at 6001.510 kb on - strand, within Psyr_5059at 6001.593 kb on + strand, within Psyr_5059at 6001.619 kb on + strand, within Psyr_5059at 6001.678 kb on + strand, within Psyr_5059at 6001.678 kb on + strand, within Psyr_5059at 6001.678 kb on + strand, within Psyr_5059at 6001.678 kb on + strand, within Psyr_5059at 6001.678 kb on + strand, within Psyr_5059at 6001.678 kb on + strand, within Psyr_5059at 6001.737 kb on + strand, within Psyr_5059at 6001.737 kb on + strand, within Psyr_5059at 6001.737 kb on + strand, within Psyr_5059at 6001.737 kb on + strand, within Psyr_5059at 6001.738 kb on - strand, within Psyr_5059at 6001.738 kb on - strand, within Psyr_5059at 6001.738 kb on - strand, within Psyr_5059at 6001.738 kb on - strand, within Psyr_5059at 6001.738 kb on - strand, within Psyr_5059at 6001.845 kb on + strand, within Psyr_5059at 6001.846 kb on - strand, within Psyr_5059at 6001.846 kb on - strand, within Psyr_5059at 6001.905 kb on + strand, within Psyr_5059at 6001.906 kb on - strand, within Psyr_5059at 6001.906 kb on - strand, within Psyr_5059at 6001.971 kb on - strandat 6002.141 kb on + strandat 6002.471 kb on + strand, within Psyr_5060at 6002.472 kb on - strand, within Psyr_5060at 6002.472 kb on - strand, within Psyr_5060at 6002.481 kb on + strand, within Psyr_5060at 6002.481 kb on + strand, within Psyr_5060at 6002.482 kb on - strand, within Psyr_5060at 6002.535 kb on + strand, within Psyr_5060at 6002.535 kb on + strand, within Psyr_5060at 6002.535 kb on + strand, within Psyr_5060at 6002.535 kb on + strand, within Psyr_5060at 6002.535 kb on + strand, within Psyr_5060at 6002.535 kb on + strand, within Psyr_5060at 6002.536 kb on - strand, within Psyr_5060at 6002.536 kb on - strand, within Psyr_5060at 6002.536 kb on - strand, within Psyr_5060at 6002.536 kb on - strand, within Psyr_5060at 6002.747 kb on + strand, within Psyr_5060at 6002.748 kb on - strand, within Psyr_5060at 6002.748 kb on - strand, within Psyr_5060at 6002.748 kb on - strand, within Psyr_5060at 6002.905 kb on - strand, within Psyr_5060

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
remove
6,000,404 - Psyr_5057 0.24 +0.9
6,000,404 - Psyr_5057 0.24 +0.9
6,000,416 - Psyr_5057 0.26 +0.7
6,000,502 + Psyr_5057 0.39 -1.3
6,000,502 + Psyr_5057 0.39 -0.0
6,000,502 + Psyr_5057 0.39 +0.1
6,000,502 + Psyr_5057 0.39 -0.3
6,000,503 - Psyr_5057 0.39 -3.1
6,000,503 - Psyr_5057 0.39 +0.2
6,000,503 - Psyr_5057 0.39 -0.6
6,000,503 - Psyr_5057 0.39 -1.0
6,000,503 - Psyr_5057 0.39 +0.4
6,000,503 - Psyr_5057 0.39 +1.6
6,000,520 + Psyr_5057 0.42 +0.7
6,000,521 - Psyr_5057 0.42 -0.1
6,000,565 + Psyr_5057 0.49 -0.5
6,000,565 + Psyr_5057 0.49 +0.7
6,000,565 + Psyr_5057 0.49 +0.2
6,000,565 + Psyr_5057 0.49 +0.4
6,000,565 + Psyr_5057 0.49 +0.2
6,000,565 + Psyr_5057 0.49 +0.7
6,000,565 + Psyr_5057 0.49 -0.5
6,000,565 + Psyr_5057 0.49 -0.4
6,000,565 + Psyr_5057 0.49 +0.6
6,000,565 + Psyr_5057 0.49 +0.3
6,000,565 + Psyr_5057 0.49 -0.2
6,000,565 + Psyr_5057 0.49 +1.2
6,000,566 - Psyr_5057 0.49 +1.4
6,000,566 - Psyr_5057 0.49 +0.1
6,000,566 - Psyr_5057 0.49 -0.6
6,000,566 - Psyr_5057 0.49 +0.8
6,000,566 - Psyr_5057 0.49 -0.8
6,000,566 - Psyr_5057 0.49 -0.5
6,000,566 - Psyr_5057 0.49 +1.1
6,000,566 - Psyr_5057 0.49 +0.1
6,000,566 - Psyr_5057 0.49 +1.3
6,000,566 - Psyr_5057 0.49 +0.9
6,000,583 + Psyr_5057 0.52 +0.4
6,000,584 - Psyr_5057 0.52 -0.6
6,000,584 - Psyr_5057 0.52 -0.1
6,000,703 + Psyr_5057 0.70 -0.6
6,000,703 + Psyr_5057 0.70 +0.2
6,000,703 + Psyr_5057 0.70 -1.9
6,000,703 + Psyr_5057 0.70 +0.9
6,000,703 + Psyr_5057 0.70 -1.0
6,000,703 + Psyr_5057 0.70 -0.5
6,000,703 + Psyr_5057 0.70 +0.4
6,000,703 + Psyr_5057 0.70 +0.0
6,000,704 - Psyr_5057 0.71 +0.9
6,000,704 - Psyr_5057 0.71 +0.1
6,000,704 - Psyr_5057 0.71 -0.3
6,000,704 - Psyr_5057 0.71 +0.2
6,000,704 - Psyr_5057 0.71 +0.2
6,000,704 - Psyr_5057 0.71 +1.7
6,000,957 + Psyr_5058 0.15 -1.5
6,000,957 + Psyr_5058 0.15 -0.2
6,000,958 - Psyr_5058 0.16 -0.5
6,000,958 - Psyr_5058 0.16 +3.3
6,000,969 + Psyr_5058 0.18 +1.6
6,000,969 + Psyr_5058 0.18 +0.4
6,000,969 + Psyr_5058 0.18 -0.1
6,001,020 - Psyr_5058 0.30 +0.2
6,001,095 + Psyr_5058 0.46 +0.0
6,001,095 + Psyr_5058 0.46 -0.1
6,001,095 + Psyr_5058 0.46 -0.4
6,001,095 + Psyr_5058 0.46 -1.7
6,001,095 + Psyr_5058 0.46 +0.2
6,001,095 + Psyr_5058 0.46 -1.8
6,001,095 + Psyr_5058 0.46 -0.6
6,001,095 + Psyr_5058 0.46 +0.5
6,001,096 - Psyr_5058 0.47 -1.0
6,001,096 - Psyr_5058 0.47 -0.3
6,001,096 - Psyr_5058 0.47 +0.4
6,001,096 - Psyr_5058 0.47 -0.3
6,001,132 - Psyr_5058 0.55 -0.5
6,001,203 + Psyr_5058 0.70 +1.9
6,001,203 + Psyr_5058 0.70 +0.6
6,001,282 - Psyr_5058 0.88 +0.8
6,001,282 - Psyr_5058 0.88 -0.6
6,001,312 + -2.8
6,001,312 + +0.9
6,001,312 + +0.6
6,001,312 + +0.4
6,001,312 + +0.9
6,001,313 - +0.1
6,001,313 - +0.2
6,001,313 - -0.7
6,001,313 - +0.1
6,001,313 - +0.4
6,001,400 + -1.1
6,001,401 - +0.4
6,001,401 - +0.1
6,001,510 - Psyr_5059 0.24 +0.7
6,001,510 - Psyr_5059 0.24 -0.2
6,001,593 + Psyr_5059 0.36 +0.6
6,001,619 + Psyr_5059 0.40 +1.4
6,001,678 + Psyr_5059 0.49 +1.1
6,001,678 + Psyr_5059 0.49 +1.2
6,001,678 + Psyr_5059 0.49 -1.3
6,001,678 + Psyr_5059 0.49 +0.4
6,001,678 + Psyr_5059 0.49 +0.9
6,001,678 + Psyr_5059 0.49 -1.6
6,001,737 + Psyr_5059 0.58 +1.1
6,001,737 + Psyr_5059 0.58 +0.9
6,001,737 + Psyr_5059 0.58 -0.6
6,001,737 + Psyr_5059 0.58 -0.5
6,001,738 - Psyr_5059 0.58 +0.7
6,001,738 - Psyr_5059 0.58 +0.5
6,001,738 - Psyr_5059 0.58 -0.6
6,001,738 - Psyr_5059 0.58 +2.5
6,001,738 - Psyr_5059 0.58 +0.4
6,001,845 + Psyr_5059 0.74 +0.9
6,001,846 - Psyr_5059 0.74 +0.1
6,001,846 - Psyr_5059 0.74 -0.2
6,001,905 + Psyr_5059 0.83 +0.7
6,001,906 - Psyr_5059 0.83 -0.5
6,001,906 - Psyr_5059 0.83 +3.7
6,001,971 - -1.0
6,002,141 + +0.9
6,002,471 + Psyr_5060 0.17 +0.6
6,002,472 - Psyr_5060 0.17 -0.3
6,002,472 - Psyr_5060 0.17 -0.6
6,002,481 + Psyr_5060 0.17 +0.3
6,002,481 + Psyr_5060 0.17 +0.8
6,002,482 - Psyr_5060 0.17 -0.9
6,002,535 + Psyr_5060 0.20 -0.3
6,002,535 + Psyr_5060 0.20 -0.6
6,002,535 + Psyr_5060 0.20 -0.9
6,002,535 + Psyr_5060 0.20 -0.5
6,002,535 + Psyr_5060 0.20 -0.6
6,002,535 + Psyr_5060 0.20 -0.4
6,002,536 - Psyr_5060 0.20 +0.7
6,002,536 - Psyr_5060 0.20 +0.9
6,002,536 - Psyr_5060 0.20 -0.2
6,002,536 - Psyr_5060 0.20 +0.2
6,002,747 + Psyr_5060 0.32 +1.6
6,002,748 - Psyr_5060 0.32 -0.0
6,002,748 - Psyr_5060 0.32 +0.9
6,002,748 - Psyr_5060 0.32 -0.1
6,002,905 - Psyr_5060 0.41 +1.3

Or see this region's nucleotide sequence