Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5003 and Psyr_5004 are separated by 121 nucleotides Psyr_5004 and Psyr_5005 are separated by 59 nucleotides
Psyr_5003: Psyr_5003 - MscS Mechanosensitive ion channel, at 5,933,543 to 5,934,343
_5003
Psyr_5004: Psyr_5004 - chemotaxis sensory transducer, at 5,934,465 to 5,936,483
_5004
Psyr_5005: Psyr_5005 - protein of unknown function DUF945, at 5,936,543 to 5,938,108
_5005
Position (kb) 5934
5935
5936
5937 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5933.485 kb on + strand at 5933.485 kb on + strand at 5933.485 kb on + strand at 5933.485 kb on + strand at 5933.486 kb on - strand at 5933.523 kb on - strand at 5933.523 kb on - strand at 5933.748 kb on - strand, within Psyr_5003 at 5933.748 kb on - strand, within Psyr_5003 at 5933.748 kb on - strand, within Psyr_5003 at 5933.748 kb on - strand, within Psyr_5003 at 5933.748 kb on - strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.780 kb on - strand, within Psyr_5003 at 5933.780 kb on - strand, within Psyr_5003 at 5933.780 kb on - strand, within Psyr_5003 at 5933.780 kb on - strand, within Psyr_5003 at 5933.780 kb on - strand, within Psyr_5003 at 5933.807 kb on + strand, within Psyr_5003 at 5933.807 kb on + strand, within Psyr_5003 at 5933.807 kb on + strand, within Psyr_5003 at 5933.807 kb on + strand, within Psyr_5003 at 5933.808 kb on - strand, within Psyr_5003 at 5933.808 kb on - strand, within Psyr_5003 at 5933.808 kb on - strand, within Psyr_5003 at 5933.808 kb on - strand, within Psyr_5003 at 5933.948 kb on - strand, within Psyr_5003 at 5934.189 kb on + strand, within Psyr_5003 at 5934.189 kb on + strand, within Psyr_5003 at 5934.189 kb on + strand, within Psyr_5003 at 5934.189 kb on + strand, within Psyr_5003 at 5934.189 kb on + strand, within Psyr_5003 at 5934.189 kb on + strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.264 kb on - strand at 5934.281 kb on + strand at 5934.281 kb on + strand at 5934.282 kb on - strand at 5934.282 kb on - strand at 5934.354 kb on + strand at 5934.408 kb on + strand at 5934.409 kb on - strand at 5934.409 kb on - strand at 5934.452 kb on + strand at 5934.460 kb on + strand at 5934.460 kb on + strand at 5934.461 kb on - strand at 5934.475 kb on + strand at 5934.475 kb on + strand at 5934.475 kb on + strand at 5934.476 kb on - strand at 5934.476 kb on - strand at 5934.476 kb on - strand at 5934.527 kb on + strand at 5934.527 kb on + strand at 5934.527 kb on + strand at 5934.527 kb on + strand at 5934.527 kb on + strand at 5934.528 kb on - strand at 5934.528 kb on - strand at 5934.528 kb on - strand at 5934.528 kb on - strand at 5934.528 kb on - strand at 5934.528 kb on - strand at 5934.582 kb on + strand at 5934.582 kb on + strand at 5934.583 kb on - strand at 5934.714 kb on + strand, within Psyr_5004 at 5934.715 kb on - strand, within Psyr_5004 at 5934.715 kb on - strand, within Psyr_5004 at 5934.793 kb on + strand, within Psyr_5004 at 5934.793 kb on + strand, within Psyr_5004 at 5934.793 kb on + strand, within Psyr_5004 at 5934.793 kb on + strand, within Psyr_5004 at 5934.794 kb on - strand, within Psyr_5004 at 5934.930 kb on + strand, within Psyr_5004 at 5934.930 kb on + strand, within Psyr_5004 at 5934.930 kb on + strand, within Psyr_5004 at 5934.931 kb on - strand, within Psyr_5004 at 5934.985 kb on - strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.318 kb on - strand, within Psyr_5004 at 5935.318 kb on - strand, within Psyr_5004 at 5935.377 kb on + strand, within Psyr_5004 at 5935.377 kb on + strand, within Psyr_5004 at 5935.377 kb on + strand, within Psyr_5004 at 5935.378 kb on - strand, within Psyr_5004 at 5935.378 kb on - strand, within Psyr_5004 at 5935.710 kb on + strand, within Psyr_5004 at 5935.710 kb on + strand, within Psyr_5004 at 5935.710 kb on + strand, within Psyr_5004 at 5935.710 kb on + strand, within Psyr_5004 at 5935.710 kb on + strand, within Psyr_5004 at 5935.711 kb on - strand, within Psyr_5004 at 5935.711 kb on - strand, within Psyr_5004 at 5935.711 kb on - strand, within Psyr_5004 at 5935.711 kb on - strand, within Psyr_5004 at 5936.481 kb on + strand at 5936.506 kb on + strand at 5936.507 kb on - strand at 5936.507 kb on - strand at 5936.545 kb on - strand at 5936.641 kb on - strand at 5936.641 kb on - strand at 5936.909 kb on - strand, within Psyr_5005 at 5937.085 kb on + strand, within Psyr_5005 at 5937.093 kb on + strand, within Psyr_5005 at 5937.093 kb on + strand, within Psyr_5005 at 5937.094 kb on - strand, within Psyr_5005 at 5937.094 kb on - strand, within Psyr_5005 at 5937.094 kb on - strand, within Psyr_5005 at 5937.103 kb on - strand, within Psyr_5005 at 5937.103 kb on - strand, within Psyr_5005 at 5937.201 kb on + strand, within Psyr_5005 at 5937.201 kb on + strand, within Psyr_5005 at 5937.201 kb on + strand, within Psyr_5005 at 5937.201 kb on + strand, within Psyr_5005 at 5937.201 kb on + strand, within Psyr_5005 at 5937.202 kb on - strand, within Psyr_5005 at 5937.202 kb on - strand, within Psyr_5005 at 5937.202 kb on - strand, within Psyr_5005 at 5937.202 kb on - strand, within Psyr_5005 at 5937.337 kb on - strand, within Psyr_5005 at 5937.337 kb on - strand, within Psyr_5005 at 5937.337 kb on - strand, within Psyr_5005 at 5937.359 kb on - strand, within Psyr_5005
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 5,933,485 + +0.0 5,933,485 + +2.7 5,933,485 + +0.3 5,933,485 + +0.8 5,933,486 - -0.3 5,933,523 - +1.4 5,933,523 - -0.3 5,933,748 - Psyr_5003 0.26 -0.4 5,933,748 - Psyr_5003 0.26 +0.1 5,933,748 - Psyr_5003 0.26 -0.0 5,933,748 - Psyr_5003 0.26 -1.7 5,933,748 - Psyr_5003 0.26 -0.1 5,933,779 + Psyr_5003 0.29 +1.0 5,933,779 + Psyr_5003 0.29 -0.8 5,933,779 + Psyr_5003 0.29 +0.2 5,933,779 + Psyr_5003 0.29 -0.2 5,933,779 + Psyr_5003 0.29 -0.9 5,933,779 + Psyr_5003 0.29 -0.2 5,933,779 + Psyr_5003 0.29 +0.2 5,933,779 + Psyr_5003 0.29 +0.1 5,933,780 - Psyr_5003 0.30 -0.1 5,933,780 - Psyr_5003 0.30 -1.6 5,933,780 - Psyr_5003 0.30 -0.7 5,933,780 - Psyr_5003 0.30 -0.5 5,933,780 - Psyr_5003 0.30 -0.1 5,933,807 + Psyr_5003 0.33 -1.1 5,933,807 + Psyr_5003 0.33 +0.8 5,933,807 + Psyr_5003 0.33 +0.4 5,933,807 + Psyr_5003 0.33 +0.1 5,933,808 - Psyr_5003 0.33 -0.2 5,933,808 - Psyr_5003 0.33 -0.3 5,933,808 - Psyr_5003 0.33 -0.5 5,933,808 - Psyr_5003 0.33 -0.1 5,933,948 - Psyr_5003 0.51 -0.4 5,934,189 + Psyr_5003 0.81 +0.9 5,934,189 + Psyr_5003 0.81 +0.9 5,934,189 + Psyr_5003 0.81 +0.9 5,934,189 + Psyr_5003 0.81 +0.9 5,934,189 + Psyr_5003 0.81 +0.4 5,934,189 + Psyr_5003 0.81 +0.5 5,934,190 - Psyr_5003 0.81 -0.1 5,934,190 - Psyr_5003 0.81 -0.2 5,934,190 - Psyr_5003 0.81 +0.9 5,934,190 - Psyr_5003 0.81 +0.7 5,934,190 - Psyr_5003 0.81 -0.4 5,934,190 - Psyr_5003 0.81 +0.9 5,934,190 - Psyr_5003 0.81 -0.5 5,934,264 - +0.5 5,934,281 + -0.1 5,934,281 + +0.6 5,934,282 - +0.2 5,934,282 - -0.5 5,934,354 + +0.0 5,934,408 + +3.5 5,934,409 - +1.0 5,934,409 - -0.3 5,934,452 + +1.4 5,934,460 + +0.2 5,934,460 + +0.7 5,934,461 - +1.4 5,934,475 + +0.6 5,934,475 + +0.9 5,934,475 + +0.1 5,934,476 - -0.6 5,934,476 - +0.6 5,934,476 - -0.1 5,934,527 + +0.4 5,934,527 + -0.4 5,934,527 + +0.6 5,934,527 + +0.3 5,934,527 + +0.3 5,934,528 - +0.0 5,934,528 - +0.0 5,934,528 - -1.0 5,934,528 - -0.2 5,934,528 - +0.7 5,934,528 - +1.0 5,934,582 + +0.9 5,934,582 + -0.2 5,934,583 - +1.7 5,934,714 + Psyr_5004 0.12 +1.1 5,934,715 - Psyr_5004 0.12 +0.5 5,934,715 - Psyr_5004 0.12 +1.1 5,934,793 + Psyr_5004 0.16 -0.1 5,934,793 + Psyr_5004 0.16 +0.3 5,934,793 + Psyr_5004 0.16 +0.1 5,934,793 + Psyr_5004 0.16 +0.9 5,934,794 - Psyr_5004 0.16 -0.8 5,934,930 + Psyr_5004 0.23 +1.3 5,934,930 + Psyr_5004 0.23 +2.9 5,934,930 + Psyr_5004 0.23 +0.2 5,934,931 - Psyr_5004 0.23 -0.3 5,934,985 - Psyr_5004 0.26 -0.1 5,935,209 + Psyr_5004 0.37 +0.5 5,935,209 + Psyr_5004 0.37 -0.3 5,935,209 + Psyr_5004 0.37 -0.9 5,935,209 + Psyr_5004 0.37 -1.1 5,935,209 + Psyr_5004 0.37 +0.6 5,935,209 + Psyr_5004 0.37 +0.9 5,935,209 + Psyr_5004 0.37 +0.1 5,935,209 + Psyr_5004 0.37 +0.3 5,935,210 - Psyr_5004 0.37 -0.0 5,935,210 - Psyr_5004 0.37 +0.6 5,935,210 - Psyr_5004 0.37 -0.1 5,935,210 - Psyr_5004 0.37 +1.9 5,935,210 - Psyr_5004 0.37 +0.5 5,935,210 - Psyr_5004 0.37 +0.4 5,935,210 - Psyr_5004 0.37 -0.3 5,935,318 - Psyr_5004 0.42 +0.2 5,935,318 - Psyr_5004 0.42 +0.8 5,935,377 + Psyr_5004 0.45 -0.4 5,935,377 + Psyr_5004 0.45 +0.9 5,935,377 + Psyr_5004 0.45 +0.6 5,935,378 - Psyr_5004 0.45 -0.1 5,935,378 - Psyr_5004 0.45 +1.9 5,935,710 + Psyr_5004 0.62 +0.4 5,935,710 + Psyr_5004 0.62 -0.2 5,935,710 + Psyr_5004 0.62 -0.2 5,935,710 + Psyr_5004 0.62 -0.2 5,935,710 + Psyr_5004 0.62 +0.6 5,935,711 - Psyr_5004 0.62 -0.6 5,935,711 - Psyr_5004 0.62 -0.2 5,935,711 - Psyr_5004 0.62 +0.1 5,935,711 - Psyr_5004 0.62 +0.3 5,936,481 + +0.6 5,936,506 + -0.4 5,936,507 - +0.9 5,936,507 - -0.6 5,936,545 - +0.4 5,936,641 - +0.5 5,936,641 - +1.3 5,936,909 - Psyr_5005 0.23 +0.2 5,937,085 + Psyr_5005 0.35 -0.9 5,937,093 + Psyr_5005 0.35 -1.7 5,937,093 + Psyr_5005 0.35 -0.2 5,937,094 - Psyr_5005 0.35 -0.5 5,937,094 - Psyr_5005 0.35 +1.2 5,937,094 - Psyr_5005 0.35 +0.5 5,937,103 - Psyr_5005 0.36 +0.6 5,937,103 - Psyr_5005 0.36 +0.2 5,937,201 + Psyr_5005 0.42 +0.6 5,937,201 + Psyr_5005 0.42 -0.2 5,937,201 + Psyr_5005 0.42 +3.5 5,937,201 + Psyr_5005 0.42 +0.1 5,937,201 + Psyr_5005 0.42 +0.1 5,937,202 - Psyr_5005 0.42 -0.3 5,937,202 - Psyr_5005 0.42 -1.8 5,937,202 - Psyr_5005 0.42 +0.4 5,937,202 - Psyr_5005 0.42 +0.9 5,937,337 - Psyr_5005 0.51 +1.6 5,937,337 - Psyr_5005 0.51 +1.1 5,937,337 - Psyr_5005 0.51 +0.5 5,937,359 - Psyr_5005 0.52 +1.0
Or see this region's nucleotide sequence