Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4990 and Psyr_4991 are separated by 7 nucleotides Psyr_4991 and Psyr_4992 are separated by 439 nucleotides Psyr_4992 and Psyr_4993 are separated by 9 nucleotides
Psyr_4990: Psyr_4990 - YD repeat protein, at 5,918,400 to 5,921,003
_4990
Psyr_4991: Psyr_4991 - hypothetical protein, at 5,921,011 to 5,921,331
_4991
Psyr_4992: Psyr_4992 - YD repeat protein, at 5,921,771 to 5,923,126
_4992
Psyr_4993: Psyr_4993 - hypothetical protein, at 5,923,136 to 5,923,936
_4993
Position (kb) 5921
5922
5923
5924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5920.801 kb on + strand at 5920.802 kb on - strand at 5920.802 kb on - strand at 5920.844 kb on + strand at 5920.895 kb on + strand at 5920.896 kb on - strand at 5920.922 kb on + strand at 5920.922 kb on + strand at 5920.923 kb on - strand at 5920.923 kb on - strand at 5921.048 kb on + strand, within Psyr_4991 at 5921.075 kb on - strand, within Psyr_4991 at 5921.123 kb on + strand, within Psyr_4991 at 5921.128 kb on - strand, within Psyr_4991 at 5921.158 kb on + strand, within Psyr_4991 at 5921.159 kb on - strand, within Psyr_4991 at 5921.226 kb on - strand, within Psyr_4991 at 5921.250 kb on - strand, within Psyr_4991 at 5921.365 kb on + strand at 5921.365 kb on + strand at 5921.463 kb on + strand at 5921.463 kb on + strand at 5921.472 kb on + strand at 5921.479 kb on - strand at 5921.486 kb on + strand at 5921.500 kb on - strand at 5921.504 kb on + strand at 5921.504 kb on + strand at 5921.505 kb on - strand at 5921.505 kb on - strand at 5921.561 kb on - strand at 5921.578 kb on + strand at 5921.579 kb on - strand at 5921.667 kb on + strand at 5921.667 kb on + strand at 5921.667 kb on + strand at 5921.667 kb on + strand at 5921.668 kb on - strand at 5921.705 kb on - strand at 5921.717 kb on + strand at 5921.717 kb on + strand at 5921.718 kb on - strand at 5921.743 kb on + strand at 5921.743 kb on + strand at 5921.743 kb on + strand at 5921.743 kb on + strand at 5921.744 kb on - strand at 5921.799 kb on - strand at 5921.799 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.841 kb on - strand at 5922.203 kb on + strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.333 kb on - strand, within Psyr_4992 at 5922.333 kb on - strand, within Psyr_4992 at 5922.333 kb on - strand, within Psyr_4992 at 5922.333 kb on - strand, within Psyr_4992 at 5922.333 kb on - strand, within Psyr_4992 at 5922.578 kb on + strand, within Psyr_4992 at 5922.578 kb on + strand, within Psyr_4992 at 5922.589 kb on + strand, within Psyr_4992 at 5922.590 kb on - strand, within Psyr_4992 at 5922.594 kb on - strand, within Psyr_4992 at 5922.594 kb on - strand, within Psyr_4992 at 5922.619 kb on + strand, within Psyr_4992 at 5922.660 kb on + strand, within Psyr_4992 at 5922.660 kb on + strand, within Psyr_4992 at 5922.851 kb on - strand, within Psyr_4992 at 5922.851 kb on - strand, within Psyr_4992 at 5922.851 kb on - strand, within Psyr_4992 at 5922.880 kb on + strand, within Psyr_4992 at 5922.880 kb on + strand, within Psyr_4992 at 5922.886 kb on + strand, within Psyr_4992 at 5922.887 kb on - strand, within Psyr_4992 at 5922.928 kb on + strand, within Psyr_4992 at 5922.928 kb on + strand, within Psyr_4992 at 5922.929 kb on - strand, within Psyr_4992 at 5922.929 kb on - strand, within Psyr_4992 at 5922.929 kb on - strand, within Psyr_4992 at 5922.930 kb on + strand, within Psyr_4992 at 5922.930 kb on + strand, within Psyr_4992 at 5922.933 kb on + strand, within Psyr_4992 at 5922.934 kb on - strand, within Psyr_4992 at 5922.968 kb on - strand, within Psyr_4992 at 5922.976 kb on + strand, within Psyr_4992 at 5923.012 kb on - strand at 5923.038 kb on - strand at 5923.238 kb on - strand, within Psyr_4993 at 5923.239 kb on + strand, within Psyr_4993 at 5923.240 kb on - strand, within Psyr_4993 at 5923.240 kb on - strand, within Psyr_4993 at 5923.326 kb on + strand, within Psyr_4993 at 5923.326 kb on + strand, within Psyr_4993 at 5923.326 kb on + strand, within Psyr_4993 at 5923.326 kb on + strand, within Psyr_4993 at 5923.326 kb on + strand, within Psyr_4993 at 5923.327 kb on - strand, within Psyr_4993 at 5923.327 kb on - strand, within Psyr_4993 at 5923.336 kb on + strand, within Psyr_4993 at 5923.337 kb on - strand, within Psyr_4993 at 5923.388 kb on + strand, within Psyr_4993 at 5923.389 kb on - strand, within Psyr_4993 at 5923.509 kb on - strand, within Psyr_4993 at 5923.509 kb on - strand, within Psyr_4993 at 5923.509 kb on - strand, within Psyr_4993 at 5923.550 kb on + strand, within Psyr_4993 at 5923.551 kb on - strand, within Psyr_4993 at 5923.570 kb on + strand, within Psyr_4993 at 5923.620 kb on + strand, within Psyr_4993 at 5923.655 kb on - strand, within Psyr_4993 at 5923.747 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.750 kb on - strand, within Psyr_4993 at 5923.750 kb on - strand, within Psyr_4993 at 5923.844 kb on + strand, within Psyr_4993 at 5923.871 kb on + strand at 5923.953 kb on + strand at 5923.991 kb on + strand at 5924.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 5,920,801 + -0.0 5,920,802 - -1.1 5,920,802 - +0.0 5,920,844 + +1.0 5,920,895 + +0.5 5,920,896 - -0.9 5,920,922 + +0.4 5,920,922 + -0.5 5,920,923 - -0.1 5,920,923 - +0.9 5,921,048 + Psyr_4991 0.12 -1.1 5,921,075 - Psyr_4991 0.20 -2.1 5,921,123 + Psyr_4991 0.35 -0.6 5,921,128 - Psyr_4991 0.36 -1.6 5,921,158 + Psyr_4991 0.46 -0.9 5,921,159 - Psyr_4991 0.46 -1.5 5,921,226 - Psyr_4991 0.67 -0.9 5,921,250 - Psyr_4991 0.74 -1.1 5,921,365 + +0.8 5,921,365 + +0.4 5,921,463 + +1.1 5,921,463 + +0.0 5,921,472 + -0.6 5,921,479 - +0.9 5,921,486 + -1.7 5,921,500 - -0.7 5,921,504 + +0.8 5,921,504 + +1.3 5,921,505 - -0.0 5,921,505 - -0.5 5,921,561 - +0.3 5,921,578 + +2.9 5,921,579 - -1.3 5,921,667 + -0.7 5,921,667 + +0.0 5,921,667 + -2.1 5,921,667 + +0.5 5,921,668 - +0.1 5,921,705 - +0.4 5,921,717 + +0.0 5,921,717 + -2.2 5,921,718 - +0.4 5,921,743 + +0.4 5,921,743 + -0.2 5,921,743 + -1.2 5,921,743 + -0.5 5,921,744 - +0.8 5,921,799 - +0.1 5,921,799 - -0.5 5,921,814 - +0.9 5,921,814 - -0.3 5,921,814 - +0.4 5,921,814 - -1.9 5,921,814 - +0.9 5,921,814 - +0.1 5,921,814 - +2.9 5,921,841 - -0.2 5,922,203 + Psyr_4992 0.32 -0.2 5,922,329 - Psyr_4992 0.41 +1.5 5,922,329 - Psyr_4992 0.41 -1.6 5,922,329 - Psyr_4992 0.41 +0.8 5,922,329 - Psyr_4992 0.41 +0.3 5,922,329 - Psyr_4992 0.41 -2.1 5,922,333 - Psyr_4992 0.41 +0.7 5,922,333 - Psyr_4992 0.41 -0.1 5,922,333 - Psyr_4992 0.41 -0.1 5,922,333 - Psyr_4992 0.41 -2.9 5,922,333 - Psyr_4992 0.41 +0.2 5,922,578 + Psyr_4992 0.60 +1.2 5,922,578 + Psyr_4992 0.60 -0.2 5,922,589 + Psyr_4992 0.60 -2.3 5,922,590 - Psyr_4992 0.60 +0.9 5,922,594 - Psyr_4992 0.61 +1.3 5,922,594 - Psyr_4992 0.61 +0.7 5,922,619 + Psyr_4992 0.63 -0.1 5,922,660 + Psyr_4992 0.66 +0.8 5,922,660 + Psyr_4992 0.66 -0.1 5,922,851 - Psyr_4992 0.80 +1.0 5,922,851 - Psyr_4992 0.80 +0.5 5,922,851 - Psyr_4992 0.80 +0.7 5,922,880 + Psyr_4992 0.82 -0.6 5,922,880 + Psyr_4992 0.82 -0.2 5,922,886 + Psyr_4992 0.82 -0.5 5,922,887 - Psyr_4992 0.82 -0.7 5,922,928 + Psyr_4992 0.85 +0.9 5,922,928 + Psyr_4992 0.85 +1.7 5,922,929 - Psyr_4992 0.85 +0.8 5,922,929 - Psyr_4992 0.85 -0.6 5,922,929 - Psyr_4992 0.85 -0.1 5,922,930 + Psyr_4992 0.85 +1.5 5,922,930 + Psyr_4992 0.85 +0.2 5,922,933 + Psyr_4992 0.86 +1.1 5,922,934 - Psyr_4992 0.86 +0.1 5,922,968 - Psyr_4992 0.88 +1.5 5,922,976 + Psyr_4992 0.89 -0.3 5,923,012 - +0.7 5,923,038 - -0.1 5,923,238 - Psyr_4993 0.13 +0.4 5,923,239 + Psyr_4993 0.13 +0.2 5,923,240 - Psyr_4993 0.13 -1.4 5,923,240 - Psyr_4993 0.13 +1.0 5,923,326 + Psyr_4993 0.24 -0.4 5,923,326 + Psyr_4993 0.24 -0.2 5,923,326 + Psyr_4993 0.24 +1.5 5,923,326 + Psyr_4993 0.24 +0.5 5,923,326 + Psyr_4993 0.24 -2.2 5,923,327 - Psyr_4993 0.24 +0.9 5,923,327 - Psyr_4993 0.24 -0.7 5,923,336 + Psyr_4993 0.25 -0.0 5,923,337 - Psyr_4993 0.25 +0.3 5,923,388 + Psyr_4993 0.31 -0.6 5,923,389 - Psyr_4993 0.32 +0.1 5,923,509 - Psyr_4993 0.47 -0.9 5,923,509 - Psyr_4993 0.47 +0.5 5,923,509 - Psyr_4993 0.47 +0.2 5,923,550 + Psyr_4993 0.52 +0.6 5,923,551 - Psyr_4993 0.52 +1.4 5,923,570 + Psyr_4993 0.54 +2.3 5,923,620 + Psyr_4993 0.60 +0.5 5,923,655 - Psyr_4993 0.65 -2.3 5,923,747 + Psyr_4993 0.76 +0.2 5,923,749 + Psyr_4993 0.77 +0.3 5,923,749 + Psyr_4993 0.77 +0.1 5,923,749 + Psyr_4993 0.77 +0.9 5,923,749 + Psyr_4993 0.77 +0.5 5,923,749 + Psyr_4993 0.77 -0.5 5,923,750 - Psyr_4993 0.77 -0.1 5,923,750 - Psyr_4993 0.77 -1.0 5,923,844 + Psyr_4993 0.88 +0.0 5,923,871 + +0.9 5,923,953 + +0.4 5,923,991 + +0.6 5,924,008 - -0.1
Or see this region's nucleotide sequence