Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4486 and Psyr_4487 are separated by 577 nucleotides Psyr_4487 and Psyr_4488 are separated by 29 nucleotides
Psyr_4486: Psyr_4486 - hypothetical protein, at 5,347,551 to 5,348,186
_4486
Psyr_4487: Psyr_4487 - Carbohydrate kinase, PfkB, at 5,348,764 to 5,349,690
_4487
Psyr_4488: Psyr_4488 - L-fucose permease, at 5,349,720 to 5,351,051
_4488
Position (kb) 5348
5349
5350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5347.783 kb on + strand, within Psyr_4486 at 5347.783 kb on + strand, within Psyr_4486 at 5347.784 kb on - strand, within Psyr_4486 at 5347.784 kb on - strand, within Psyr_4486 at 5347.808 kb on + strand, within Psyr_4486 at 5347.809 kb on - strand, within Psyr_4486 at 5347.809 kb on - strand, within Psyr_4486 at 5347.809 kb on - strand, within Psyr_4486 at 5347.809 kb on - strand, within Psyr_4486 at 5347.811 kb on + strand, within Psyr_4486 at 5347.811 kb on + strand, within Psyr_4486 at 5347.811 kb on + strand, within Psyr_4486 at 5347.812 kb on - strand, within Psyr_4486 at 5347.812 kb on - strand, within Psyr_4486 at 5347.812 kb on - strand, within Psyr_4486 at 5347.812 kb on - strand, within Psyr_4486 at 5347.842 kb on + strand, within Psyr_4486 at 5347.871 kb on + strand, within Psyr_4486 at 5347.872 kb on - strand, within Psyr_4486 at 5347.872 kb on - strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.895 kb on - strand, within Psyr_4486 at 5348.007 kb on + strand, within Psyr_4486 at 5348.008 kb on - strand, within Psyr_4486 at 5348.008 kb on - strand, within Psyr_4486 at 5348.038 kb on + strand, within Psyr_4486 at 5348.077 kb on + strand, within Psyr_4486 at 5348.077 kb on + strand, within Psyr_4486 at 5348.077 kb on + strand, within Psyr_4486 at 5348.077 kb on + strand, within Psyr_4486 at 5348.078 kb on - strand, within Psyr_4486 at 5348.078 kb on - strand, within Psyr_4486 at 5348.078 kb on - strand, within Psyr_4486 at 5348.124 kb on - strand at 5348.206 kb on + strand at 5348.253 kb on + strand at 5348.253 kb on + strand at 5348.261 kb on - strand at 5348.271 kb on + strand at 5348.355 kb on + strand at 5348.355 kb on + strand at 5348.355 kb on + strand at 5348.356 kb on - strand at 5348.404 kb on - strand at 5348.404 kb on - strand at 5348.410 kb on + strand at 5348.423 kb on - strand at 5348.465 kb on + strand at 5348.465 kb on + strand at 5348.466 kb on - strand at 5348.466 kb on - strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.481 kb on + strand at 5348.481 kb on + strand at 5348.481 kb on + strand at 5348.481 kb on + strand at 5348.481 kb on + strand at 5348.481 kb on + strand at 5348.481 kb on + strand at 5348.482 kb on - strand at 5348.482 kb on - strand at 5348.482 kb on - strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.812 kb on + strand at 5348.812 kb on + strand at 5348.812 kb on + strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5349.075 kb on + strand, within Psyr_4487 at 5349.449 kb on - strand, within Psyr_4487 at 5349.449 kb on - strand, within Psyr_4487 at 5349.449 kb on - strand, within Psyr_4487 at 5349.449 kb on - strand, within Psyr_4487 at 5349.599 kb on - strand at 5349.718 kb on + strand at 5349.718 kb on + strand at 5349.719 kb on - strand at 5349.725 kb on + strand at 5349.725 kb on + strand at 5349.725 kb on + strand at 5349.725 kb on + strand at 5349.726 kb on - strand at 5349.726 kb on - strand at 5349.726 kb on - strand at 5349.726 kb on - strand at 5349.759 kb on + strand at 5349.805 kb on + strand at 5349.805 kb on + strand at 5349.805 kb on + strand at 5349.805 kb on + strand at 5349.805 kb on + strand at 5349.806 kb on - strand at 5349.806 kb on - strand at 5349.806 kb on - strand at 5349.806 kb on - strand at 5349.915 kb on + strand, within Psyr_4488 at 5349.916 kb on - strand, within Psyr_4488 at 5349.924 kb on + strand, within Psyr_4488 at 5349.972 kb on + strand, within Psyr_4488 at 5349.972 kb on + strand, within Psyr_4488 at 5349.972 kb on + strand, within Psyr_4488 at 5349.973 kb on - strand, within Psyr_4488 at 5349.973 kb on - strand, within Psyr_4488 at 5349.973 kb on - strand, within Psyr_4488 at 5349.973 kb on - strand, within Psyr_4488 at 5350.005 kb on + strand, within Psyr_4488 at 5350.005 kb on + strand, within Psyr_4488 at 5350.006 kb on - strand, within Psyr_4488 at 5350.006 kb on - strand, within Psyr_4488 at 5350.006 kb on - strand, within Psyr_4488 at 5350.053 kb on + strand, within Psyr_4488 at 5350.053 kb on + strand, within Psyr_4488 at 5350.054 kb on - strand, within Psyr_4488 at 5350.054 kb on - strand, within Psyr_4488 at 5350.125 kb on + strand, within Psyr_4488 at 5350.125 kb on + strand, within Psyr_4488 at 5350.125 kb on + strand, within Psyr_4488 at 5350.125 kb on + strand, within Psyr_4488 at 5350.126 kb on - strand, within Psyr_4488 at 5350.215 kb on + strand, within Psyr_4488 at 5350.215 kb on + strand, within Psyr_4488 at 5350.215 kb on + strand, within Psyr_4488 at 5350.215 kb on + strand, within Psyr_4488 at 5350.215 kb on + strand, within Psyr_4488 at 5350.215 kb on + strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.335 kb on + strand, within Psyr_4488 at 5350.336 kb on - strand, within Psyr_4488 at 5350.360 kb on + strand, within Psyr_4488 at 5350.360 kb on + strand, within Psyr_4488 at 5350.360 kb on + strand, within Psyr_4488 at 5350.360 kb on + strand, within Psyr_4488 at 5350.360 kb on + strand, within Psyr_4488 at 5350.361 kb on - strand, within Psyr_4488 at 5350.361 kb on - strand, within Psyr_4488 at 5350.361 kb on - strand, within Psyr_4488 at 5350.379 kb on - strand, within Psyr_4488 at 5350.509 kb on + strand, within Psyr_4488 at 5350.509 kb on + strand, within Psyr_4488 at 5350.510 kb on - strand, within Psyr_4488 at 5350.510 kb on - strand, within Psyr_4488 at 5350.510 kb on - strand, within Psyr_4488 at 5350.510 kb on - strand, within Psyr_4488 at 5350.544 kb on + strand, within Psyr_4488 at 5350.620 kb on + strand, within Psyr_4488 at 5350.621 kb on - strand, within Psyr_4488 at 5350.689 kb on + strand, within Psyr_4488 at 5350.689 kb on + strand, within Psyr_4488 at 5350.689 kb on + strand, within Psyr_4488 at 5350.689 kb on + strand, within Psyr_4488 at 5350.689 kb on + strand, within Psyr_4488
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 5,347,783 + Psyr_4486 0.36 -0.0 5,347,783 + Psyr_4486 0.36 +0.2 5,347,784 - Psyr_4486 0.37 +0.5 5,347,784 - Psyr_4486 0.37 -0.2 5,347,808 + Psyr_4486 0.40 -0.6 5,347,809 - Psyr_4486 0.41 +2.4 5,347,809 - Psyr_4486 0.41 +0.1 5,347,809 - Psyr_4486 0.41 +0.7 5,347,809 - Psyr_4486 0.41 -0.8 5,347,811 + Psyr_4486 0.41 +0.1 5,347,811 + Psyr_4486 0.41 -2.9 5,347,811 + Psyr_4486 0.41 -1.4 5,347,812 - Psyr_4486 0.41 +0.5 5,347,812 - Psyr_4486 0.41 +1.0 5,347,812 - Psyr_4486 0.41 +0.4 5,347,812 - Psyr_4486 0.41 +1.0 5,347,842 + Psyr_4486 0.46 +0.1 5,347,871 + Psyr_4486 0.50 +0.4 5,347,872 - Psyr_4486 0.50 +0.3 5,347,872 - Psyr_4486 0.50 +1.4 5,347,873 + Psyr_4486 0.51 +2.5 5,347,873 + Psyr_4486 0.51 +1.1 5,347,873 + Psyr_4486 0.51 -0.2 5,347,873 + Psyr_4486 0.51 +0.3 5,347,873 + Psyr_4486 0.51 +0.5 5,347,873 + Psyr_4486 0.51 -1.0 5,347,873 + Psyr_4486 0.51 +0.1 5,347,873 + Psyr_4486 0.51 -0.2 5,347,873 + Psyr_4486 0.51 -0.0 5,347,873 + Psyr_4486 0.51 -0.5 5,347,873 + Psyr_4486 0.51 -0.4 5,347,873 + Psyr_4486 0.51 +0.3 5,347,873 + Psyr_4486 0.51 +2.2 5,347,873 + Psyr_4486 0.51 -0.4 5,347,873 + Psyr_4486 0.51 +0.6 5,347,873 + Psyr_4486 0.51 +0.1 5,347,873 + Psyr_4486 0.51 -0.1 5,347,874 - Psyr_4486 0.51 -0.2 5,347,874 - Psyr_4486 0.51 +1.2 5,347,874 - Psyr_4486 0.51 +0.5 5,347,874 - Psyr_4486 0.51 -0.3 5,347,874 - Psyr_4486 0.51 +0.3 5,347,874 - Psyr_4486 0.51 -0.6 5,347,874 - Psyr_4486 0.51 -0.8 5,347,874 - Psyr_4486 0.51 -0.7 5,347,874 - Psyr_4486 0.51 +1.1 5,347,874 - Psyr_4486 0.51 -0.4 5,347,895 - Psyr_4486 0.54 +0.4 5,348,007 + Psyr_4486 0.72 -0.0 5,348,008 - Psyr_4486 0.72 +0.5 5,348,008 - Psyr_4486 0.72 +0.4 5,348,038 + Psyr_4486 0.77 +0.9 5,348,077 + Psyr_4486 0.83 -0.2 5,348,077 + Psyr_4486 0.83 +1.0 5,348,077 + Psyr_4486 0.83 +0.1 5,348,077 + Psyr_4486 0.83 +0.1 5,348,078 - Psyr_4486 0.83 -0.3 5,348,078 - Psyr_4486 0.83 +0.9 5,348,078 - Psyr_4486 0.83 +0.4 5,348,124 - -0.4 5,348,206 + +0.6 5,348,253 + -0.4 5,348,253 + +1.1 5,348,261 - -0.0 5,348,271 + +1.0 5,348,355 + -0.1 5,348,355 + -1.1 5,348,355 + +1.3 5,348,356 - +1.1 5,348,404 - -0.0 5,348,404 - -0.0 5,348,410 + -0.2 5,348,423 - -0.3 5,348,465 + +1.7 5,348,465 + -0.1 5,348,466 - +1.0 5,348,466 - -0.0 5,348,477 + +0.1 5,348,477 + +0.1 5,348,477 + +0.2 5,348,477 + -0.9 5,348,477 + +1.3 5,348,477 + +0.3 5,348,477 + -0.1 5,348,477 + +1.2 5,348,478 - -0.7 5,348,478 - -0.0 5,348,478 - +0.7 5,348,478 - +0.0 5,348,478 - -1.0 5,348,478 - -0.1 5,348,478 - +0.8 5,348,478 - +1.1 5,348,481 + +0.0 5,348,481 + +0.1 5,348,481 + -0.7 5,348,481 + +0.7 5,348,481 + -1.2 5,348,481 + +0.4 5,348,481 + +0.1 5,348,482 - -0.1 5,348,482 - +0.4 5,348,482 - -0.7 5,348,759 + +0.7 5,348,759 + +2.7 5,348,759 + +0.6 5,348,759 + +0.7 5,348,759 + +0.7 5,348,759 + +1.0 5,348,759 + -0.2 5,348,759 + -0.9 5,348,760 - +0.8 5,348,760 - -0.1 5,348,760 - -0.3 5,348,760 - +0.3 5,348,760 - +0.3 5,348,760 - -0.2 5,348,760 - -0.9 5,348,760 - +0.0 5,348,760 - +0.2 5,348,760 - -0.3 5,348,760 - +0.3 5,348,812 + -1.1 5,348,812 + +0.4 5,348,812 + +1.2 5,348,813 - +0.4 5,348,813 - -0.4 5,348,813 - +0.3 5,348,813 - +0.2 5,348,813 - -1.2 5,348,813 - +0.9 5,348,813 - -0.9 5,348,813 - +0.1 5,349,075 + Psyr_4487 0.34 -0.6 5,349,449 - Psyr_4487 0.74 -1.9 5,349,449 - Psyr_4487 0.74 -0.2 5,349,449 - Psyr_4487 0.74 -0.7 5,349,449 - Psyr_4487 0.74 +0.0 5,349,599 - +0.1 5,349,718 + -0.5 5,349,718 + -0.8 5,349,719 - -0.3 5,349,725 + -0.7 5,349,725 + +0.1 5,349,725 + -0.0 5,349,725 + +0.8 5,349,726 - -2.6 5,349,726 - +0.2 5,349,726 - -0.3 5,349,726 - -0.1 5,349,759 + +0.7 5,349,805 + -0.1 5,349,805 + +2.4 5,349,805 + -1.6 5,349,805 + +0.7 5,349,805 + +1.8 5,349,806 - -0.4 5,349,806 - +0.9 5,349,806 - +0.4 5,349,806 - -2.1 5,349,915 + Psyr_4488 0.15 +0.2 5,349,916 - Psyr_4488 0.15 +0.8 5,349,924 + Psyr_4488 0.15 -0.4 5,349,972 + Psyr_4488 0.19 -0.8 5,349,972 + Psyr_4488 0.19 -0.4 5,349,972 + Psyr_4488 0.19 +2.3 5,349,973 - Psyr_4488 0.19 +0.2 5,349,973 - Psyr_4488 0.19 +0.9 5,349,973 - Psyr_4488 0.19 +0.4 5,349,973 - Psyr_4488 0.19 +2.3 5,350,005 + Psyr_4488 0.21 +0.1 5,350,005 + Psyr_4488 0.21 -0.0 5,350,006 - Psyr_4488 0.21 -0.1 5,350,006 - Psyr_4488 0.21 -0.7 5,350,006 - Psyr_4488 0.21 -0.5 5,350,053 + Psyr_4488 0.25 +0.9 5,350,053 + Psyr_4488 0.25 +0.1 5,350,054 - Psyr_4488 0.25 -0.9 5,350,054 - Psyr_4488 0.25 -0.3 5,350,125 + Psyr_4488 0.30 -1.6 5,350,125 + Psyr_4488 0.30 -0.3 5,350,125 + Psyr_4488 0.30 -0.4 5,350,125 + Psyr_4488 0.30 +0.5 5,350,126 - Psyr_4488 0.30 +1.3 5,350,215 + Psyr_4488 0.37 -0.3 5,350,215 + Psyr_4488 0.37 +0.7 5,350,215 + Psyr_4488 0.37 +1.5 5,350,215 + Psyr_4488 0.37 +1.8 5,350,215 + Psyr_4488 0.37 +1.1 5,350,215 + Psyr_4488 0.37 +0.1 5,350,216 - Psyr_4488 0.37 -0.2 5,350,216 - Psyr_4488 0.37 +1.0 5,350,216 - Psyr_4488 0.37 +1.1 5,350,216 - Psyr_4488 0.37 -0.5 5,350,216 - Psyr_4488 0.37 -0.5 5,350,216 - Psyr_4488 0.37 +0.5 5,350,216 - Psyr_4488 0.37 -0.7 5,350,216 - Psyr_4488 0.37 +1.7 5,350,335 + Psyr_4488 0.46 -0.2 5,350,336 - Psyr_4488 0.46 +0.7 5,350,360 + Psyr_4488 0.48 -0.3 5,350,360 + Psyr_4488 0.48 +0.4 5,350,360 + Psyr_4488 0.48 +1.0 5,350,360 + Psyr_4488 0.48 +0.7 5,350,360 + Psyr_4488 0.48 +0.3 5,350,361 - Psyr_4488 0.48 -1.0 5,350,361 - Psyr_4488 0.48 +0.4 5,350,361 - Psyr_4488 0.48 -2.5 5,350,379 - Psyr_4488 0.49 -0.2 5,350,509 + Psyr_4488 0.59 -0.1 5,350,509 + Psyr_4488 0.59 +0.4 5,350,510 - Psyr_4488 0.59 +1.9 5,350,510 - Psyr_4488 0.59 +0.0 5,350,510 - Psyr_4488 0.59 +1.0 5,350,510 - Psyr_4488 0.59 -0.5 5,350,544 + Psyr_4488 0.62 +1.7 5,350,620 + Psyr_4488 0.68 +0.2 5,350,621 - Psyr_4488 0.68 +1.4 5,350,689 + Psyr_4488 0.73 +1.5 5,350,689 + Psyr_4488 0.73 +1.3 5,350,689 + Psyr_4488 0.73 +1.0 5,350,689 + Psyr_4488 0.73 +0.0 5,350,689 + Psyr_4488 0.73 +1.0
Or see this region's nucleotide sequence