Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3241

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3240 and Psyr_3241 are separated by 109 nucleotidesPsyr_3241 and Psyr_3242 are separated by 271 nucleotides Psyr_3240: Psyr_3240 - CTP synthase, at 3,879,008 to 3,879,730 _3240 Psyr_3241: Psyr_3241 - D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein, at 3,879,840 to 3,880,772 _3241 Psyr_3242: Psyr_3242 - Glycerophosphodiester phosphodiesterase, at 3,881,044 to 3,882,186 _3242 Position (kb) 3879 3880 3881Strain fitness (log2 ratio) -1 0 1 2at 3878.983 kb on + strandat 3878.983 kb on + strandat 3878.983 kb on + strandat 3878.983 kb on + strandat 3878.983 kb on + strandat 3878.984 kb on - strandat 3878.984 kb on - strandat 3878.984 kb on - strandat 3878.984 kb on - strandat 3879.014 kb on + strandat 3879.015 kb on - strandat 3879.108 kb on + strand, within Psyr_3240at 3879.108 kb on + strand, within Psyr_3240at 3879.109 kb on - strand, within Psyr_3240at 3879.408 kb on + strand, within Psyr_3240at 3879.771 kb on - strandat 3879.771 kb on - strandat 3879.772 kb on + strandat 3879.773 kb on - strandat 3879.773 kb on - strandat 3879.773 kb on - strandat 3880.237 kb on + strand, within Psyr_3241at 3880.238 kb on - strand, within Psyr_3241at 3880.454 kb on + strand, within Psyr_3241at 3880.454 kb on + strand, within Psyr_3241at 3880.454 kb on + strand, within Psyr_3241at 3880.455 kb on - strand, within Psyr_3241at 3880.455 kb on - strand, within Psyr_3241at 3880.455 kb on - strand, within Psyr_3241at 3880.732 kb on + strandat 3880.732 kb on + strandat 3880.732 kb on + strandat 3880.732 kb on + strandat 3880.732 kb on + strandat 3880.732 kb on + strandat 3880.872 kb on - strandat 3880.886 kb on + strandat 3880.886 kb on + strandat 3880.887 kb on - strandat 3881.170 kb on + strand, within Psyr_3242at 3881.171 kb on - strand, within Psyr_3242at 3881.246 kb on - strand, within Psyr_3242at 3881.276 kb on - strand, within Psyr_3242at 3881.276 kb on - strand, within Psyr_3242at 3881.319 kb on - strand, within Psyr_3242at 3881.479 kb on + strand, within Psyr_3242at 3881.479 kb on + strand, within Psyr_3242at 3881.479 kb on + strand, within Psyr_3242at 3881.479 kb on + strand, within Psyr_3242at 3881.479 kb on + strand, within Psyr_3242at 3881.480 kb on - strand, within Psyr_3242at 3881.480 kb on - strand, within Psyr_3242at 3881.480 kb on - strand, within Psyr_3242at 3881.554 kb on + strand, within Psyr_3242at 3881.554 kb on + strand, within Psyr_3242at 3881.554 kb on + strand, within Psyr_3242at 3881.555 kb on - strand, within Psyr_3242at 3881.555 kb on - strand, within Psyr_3242at 3881.555 kb on - strand, within Psyr_3242

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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3,878,983 + +0.8
3,878,983 + +0.5
3,878,983 + -0.0
3,878,983 + -0.7
3,878,983 + +1.1
3,878,984 - +1.3
3,878,984 - -0.3
3,878,984 - +1.7
3,878,984 - -0.0
3,879,014 + -0.6
3,879,015 - -0.5
3,879,108 + Psyr_3240 0.14 +1.8
3,879,108 + Psyr_3240 0.14 +0.1
3,879,109 - Psyr_3240 0.14 +0.6
3,879,408 + Psyr_3240 0.55 +0.5
3,879,771 - -0.2
3,879,771 - -0.4
3,879,772 + +0.6
3,879,773 - +1.4
3,879,773 - +0.3
3,879,773 - +0.1
3,880,237 + Psyr_3241 0.43 -0.5
3,880,238 - Psyr_3241 0.43 -1.3
3,880,454 + Psyr_3241 0.66 -1.3
3,880,454 + Psyr_3241 0.66 +0.4
3,880,454 + Psyr_3241 0.66 -0.1
3,880,455 - Psyr_3241 0.66 -1.3
3,880,455 - Psyr_3241 0.66 +1.3
3,880,455 - Psyr_3241 0.66 -1.2
3,880,732 + +0.0
3,880,732 + +0.3
3,880,732 + +1.1
3,880,732 + +0.4
3,880,732 + +0.3
3,880,732 + +0.3
3,880,872 - -0.3
3,880,886 + +0.3
3,880,886 + +0.6
3,880,887 - -0.1
3,881,170 + Psyr_3242 0.11 +1.6
3,881,171 - Psyr_3242 0.11 -1.0
3,881,246 - Psyr_3242 0.18 +0.5
3,881,276 - Psyr_3242 0.20 -0.2
3,881,276 - Psyr_3242 0.20 -0.6
3,881,319 - Psyr_3242 0.24 -1.2
3,881,479 + Psyr_3242 0.38 +0.6
3,881,479 + Psyr_3242 0.38 -1.7
3,881,479 + Psyr_3242 0.38 -0.6
3,881,479 + Psyr_3242 0.38 +1.4
3,881,479 + Psyr_3242 0.38 -0.2
3,881,480 - Psyr_3242 0.38 +0.8
3,881,480 - Psyr_3242 0.38 -0.7
3,881,480 - Psyr_3242 0.38 +1.7
3,881,554 + Psyr_3242 0.45 -0.4
3,881,554 + Psyr_3242 0.45 +0.8
3,881,554 + Psyr_3242 0.45 +1.8
3,881,555 - Psyr_3242 0.45 -0.1
3,881,555 - Psyr_3242 0.45 +0.8
3,881,555 - Psyr_3242 0.45 +0.7

Or see this region's nucleotide sequence