Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3096

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3095 and Psyr_3096 overlap by 4 nucleotidesPsyr_3096 and Psyr_3097 are separated by 106 nucleotides Psyr_3095: Psyr_3095 - transport system permease protein, at 3,710,645 to 3,711,667 _3095 Psyr_3096: Psyr_3096 - ABC transporter, at 3,711,664 to 3,712,455 _3096 Psyr_3097: Psyr_3097 - Peptidase U32, at 3,712,562 to 3,714,568 _3097 Position (kb) 3711 3712 3713Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3710.792 kb on + strand, within Psyr_3095at 3710.792 kb on + strand, within Psyr_3095at 3710.792 kb on + strand, within Psyr_3095at 3710.792 kb on + strand, within Psyr_3095at 3710.792 kb on + strand, within Psyr_3095at 3710.792 kb on + strand, within Psyr_3095at 3710.792 kb on + strand, within Psyr_3095at 3710.793 kb on - strand, within Psyr_3095at 3710.793 kb on - strand, within Psyr_3095at 3710.793 kb on - strand, within Psyr_3095at 3710.807 kb on - strand, within Psyr_3095at 3711.381 kb on + strand, within Psyr_3095at 3711.382 kb on - strand, within Psyr_3095at 3712.524 kb on + strandat 3712.655 kb on + strandat 3712.655 kb on + strandat 3712.655 kb on + strandat 3712.656 kb on - strandat 3712.656 kb on - strandat 3712.656 kb on - strandat 3713.092 kb on + strand, within Psyr_3097at 3713.093 kb on - strand, within Psyr_3097at 3713.093 kb on - strand, within Psyr_3097at 3713.093 kb on - strand, within Psyr_3097at 3713.159 kb on + strand, within Psyr_3097at 3713.295 kb on - strand, within Psyr_3097at 3713.330 kb on + strand, within Psyr_3097at 3713.330 kb on + strand, within Psyr_3097at 3713.331 kb on - strand, within Psyr_3097

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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3,710,792 + Psyr_3095 0.14 -1.1
3,710,792 + Psyr_3095 0.14 -1.1
3,710,792 + Psyr_3095 0.14 +1.3
3,710,792 + Psyr_3095 0.14 -1.9
3,710,792 + Psyr_3095 0.14 +0.6
3,710,792 + Psyr_3095 0.14 -0.8
3,710,792 + Psyr_3095 0.14 +0.3
3,710,793 - Psyr_3095 0.14 +1.3
3,710,793 - Psyr_3095 0.14 -0.2
3,710,793 - Psyr_3095 0.14 -1.2
3,710,807 - Psyr_3095 0.16 -1.4
3,711,381 + Psyr_3095 0.72 -2.0
3,711,382 - Psyr_3095 0.72 +0.3
3,712,524 + -2.3
3,712,655 + +0.2
3,712,655 + +0.4
3,712,655 + -0.3
3,712,656 - +2.1
3,712,656 - -0.9
3,712,656 - +1.1
3,713,092 + Psyr_3097 0.26 -1.3
3,713,093 - Psyr_3097 0.26 -0.8
3,713,093 - Psyr_3097 0.26 +0.9
3,713,093 - Psyr_3097 0.26 -2.1
3,713,159 + Psyr_3097 0.30 -0.2
3,713,295 - Psyr_3097 0.37 -0.9
3,713,330 + Psyr_3097 0.38 +0.0
3,713,330 + Psyr_3097 0.38 +1.3
3,713,331 - Psyr_3097 0.38 -3.2

Or see this region's nucleotide sequence