Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2928

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2926 and Psyr_2927 are separated by 110 nucleotidesPsyr_2927 and Psyr_2928 are separated by 79 nucleotidesPsyr_2928 and Psyr_2929 are separated by 58 nucleotidesPsyr_2929 and Psyr_2930 are separated by 54 nucleotides Psyr_2926: Psyr_2926 - General substrate transporter:Major facilitator superfamily, at 3,514,660 to 3,515,865 _2926 Psyr_2927: Psyr_2927 - transcriptional regulator, TetR family, at 3,515,976 to 3,516,602 _2927 Psyr_2928: Psyr_2928 - ABC transporter, transmembrane region:ABC transporter, at 3,516,682 to 3,518,535 _2928 Psyr_2929: Psyr_2929 - transcriptional regulator, LysR family, at 3,518,594 to 3,519,466 _2929 Psyr_2930: Psyr_2930 - Glyoxalase/bleomycin resistance protein/dioxygenase, at 3,519,521 to 3,519,946 _2930 Position (kb) 3516 3517 3518 3519Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3515.694 kb on - strand, within Psyr_2926at 3515.859 kb on + strandat 3515.860 kb on - strandat 3515.934 kb on - strandat 3516.016 kb on + strandat 3516.124 kb on - strand, within Psyr_2927at 3516.186 kb on + strand, within Psyr_2927at 3516.408 kb on - strand, within Psyr_2927at 3516.500 kb on + strand, within Psyr_2927at 3516.793 kb on + strandat 3516.794 kb on - strandat 3516.835 kb on + strandat 3516.925 kb on - strand, within Psyr_2928at 3516.925 kb on - strand, within Psyr_2928at 3517.004 kb on + strand, within Psyr_2928at 3517.004 kb on + strand, within Psyr_2928at 3517.187 kb on - strand, within Psyr_2928at 3517.187 kb on - strand, within Psyr_2928at 3517.187 kb on - strand, within Psyr_2928at 3517.187 kb on - strand, within Psyr_2928at 3517.282 kb on + strand, within Psyr_2928at 3517.282 kb on + strand, within Psyr_2928at 3517.282 kb on + strand, within Psyr_2928at 3517.283 kb on - strand, within Psyr_2928at 3517.283 kb on - strand, within Psyr_2928at 3517.363 kb on + strand, within Psyr_2928at 3517.363 kb on + strand, within Psyr_2928at 3517.364 kb on - strand, within Psyr_2928at 3517.364 kb on - strand, within Psyr_2928at 3517.364 kb on - strand, within Psyr_2928at 3517.382 kb on + strand, within Psyr_2928at 3517.851 kb on - strand, within Psyr_2928at 3517.912 kb on + strand, within Psyr_2928at 3517.912 kb on + strand, within Psyr_2928at 3517.912 kb on + strand, within Psyr_2928at 3517.912 kb on + strand, within Psyr_2928at 3517.912 kb on + strand, within Psyr_2928at 3517.912 kb on + strand, within Psyr_2928at 3517.912 kb on + strand, within Psyr_2928at 3517.912 kb on + strand, within Psyr_2928at 3518.050 kb on + strand, within Psyr_2928at 3518.461 kb on + strandat 3518.461 kb on + strandat 3518.461 kb on + strandat 3518.461 kb on + strandat 3518.462 kb on - strandat 3518.582 kb on + strandat 3518.618 kb on - strandat 3518.830 kb on + strand, within Psyr_2929at 3518.831 kb on - strand, within Psyr_2929at 3518.886 kb on + strand, within Psyr_2929at 3518.886 kb on + strand, within Psyr_2929at 3519.091 kb on + strand, within Psyr_2929at 3519.361 kb on + strand, within Psyr_2929at 3519.361 kb on + strand, within Psyr_2929at 3519.362 kb on - strand, within Psyr_2929at 3519.362 kb on - strand, within Psyr_2929at 3519.362 kb on - strand, within Psyr_2929at 3519.387 kb on + strandat 3519.387 kb on + strandat 3519.388 kb on - strandat 3519.388 kb on - strandat 3519.388 kb on - strandat 3519.388 kb on - strandat 3519.519 kb on + strandat 3519.520 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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3,515,694 - Psyr_2926 0.86 -0.9
3,515,859 + -0.1
3,515,860 - -0.5
3,515,934 - +0.7
3,516,016 + -0.5
3,516,124 - Psyr_2927 0.24 +0.5
3,516,186 + Psyr_2927 0.33 +0.5
3,516,408 - Psyr_2927 0.69 +0.1
3,516,500 + Psyr_2927 0.84 -2.0
3,516,793 + -0.7
3,516,794 - +2.5
3,516,835 + -0.5
3,516,925 - Psyr_2928 0.13 +0.1
3,516,925 - Psyr_2928 0.13 +0.5
3,517,004 + Psyr_2928 0.17 -0.9
3,517,004 + Psyr_2928 0.17 -0.8
3,517,187 - Psyr_2928 0.27 +0.4
3,517,187 - Psyr_2928 0.27 -1.4
3,517,187 - Psyr_2928 0.27 -0.2
3,517,187 - Psyr_2928 0.27 -0.2
3,517,282 + Psyr_2928 0.32 +0.2
3,517,282 + Psyr_2928 0.32 +0.8
3,517,282 + Psyr_2928 0.32 +0.4
3,517,283 - Psyr_2928 0.32 -0.0
3,517,283 - Psyr_2928 0.32 -0.4
3,517,363 + Psyr_2928 0.37 +2.2
3,517,363 + Psyr_2928 0.37 -0.0
3,517,364 - Psyr_2928 0.37 +1.2
3,517,364 - Psyr_2928 0.37 -1.4
3,517,364 - Psyr_2928 0.37 -0.4
3,517,382 + Psyr_2928 0.38 +0.1
3,517,851 - Psyr_2928 0.63 +0.1
3,517,912 + Psyr_2928 0.66 -0.8
3,517,912 + Psyr_2928 0.66 +0.3
3,517,912 + Psyr_2928 0.66 +0.9
3,517,912 + Psyr_2928 0.66 -1.1
3,517,912 + Psyr_2928 0.66 -0.2
3,517,912 + Psyr_2928 0.66 -0.5
3,517,912 + Psyr_2928 0.66 +0.1
3,517,912 + Psyr_2928 0.66 -0.3
3,518,050 + Psyr_2928 0.74 -0.6
3,518,461 + +0.4
3,518,461 + +0.8
3,518,461 + +1.3
3,518,461 + +0.7
3,518,462 - +0.1
3,518,582 + -0.0
3,518,618 - -0.9
3,518,830 + Psyr_2929 0.27 +0.3
3,518,831 - Psyr_2929 0.27 +1.4
3,518,886 + Psyr_2929 0.33 +1.1
3,518,886 + Psyr_2929 0.33 +0.4
3,519,091 + Psyr_2929 0.57 +0.4
3,519,361 + Psyr_2929 0.88 -0.2
3,519,361 + Psyr_2929 0.88 -1.2
3,519,362 - Psyr_2929 0.88 -0.6
3,519,362 - Psyr_2929 0.88 -0.6
3,519,362 - Psyr_2929 0.88 -0.2
3,519,387 + +3.5
3,519,387 + -0.4
3,519,388 - -1.2
3,519,388 - +0.5
3,519,388 - +1.8
3,519,388 - -0.1
3,519,519 + -1.0
3,519,520 - +0.4

Or see this region's nucleotide sequence