Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2560 and Psyr_2561 are separated by 12 nucleotides Psyr_2561 and Psyr_2562 overlap by 4 nucleotides
Psyr_2560: Psyr_2560 - hypothetical protein, at 2,974,045 to 2,975,091
_2560
Psyr_2561: Psyr_2561 - hypothetical protein, at 2,975,104 to 2,975,691
_2561
Psyr_2562: Psyr_2562 - hypothetical protein, at 2,975,688 to 2,977,271
_2562
Position (kb)
2975
2976 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2974.144 kb on + strand at 2974.145 kb on - strand at 2974.270 kb on + strand, within Psyr_2560 at 2974.284 kb on + strand, within Psyr_2560 at 2974.597 kb on + strand, within Psyr_2560 at 2974.598 kb on - strand, within Psyr_2560 at 2974.598 kb on - strand, within Psyr_2560 at 2974.598 kb on - strand, within Psyr_2560 at 2974.598 kb on - strand, within Psyr_2560 at 2974.598 kb on - strand, within Psyr_2560 at 2974.691 kb on + strand, within Psyr_2560 at 2974.692 kb on - strand, within Psyr_2560 at 2974.692 kb on - strand, within Psyr_2560 at 2974.692 kb on - strand, within Psyr_2560 at 2974.692 kb on - strand, within Psyr_2560 at 2974.695 kb on + strand, within Psyr_2560 at 2974.695 kb on + strand, within Psyr_2560 at 2974.696 kb on - strand, within Psyr_2560 at 2974.696 kb on - strand, within Psyr_2560 at 2974.696 kb on - strand, within Psyr_2560 at 2975.103 kb on + strand at 2975.104 kb on - strand at 2975.163 kb on + strand, within Psyr_2561 at 2975.188 kb on + strand, within Psyr_2561 at 2975.264 kb on - strand, within Psyr_2561 at 2975.264 kb on - strand, within Psyr_2561 at 2975.590 kb on + strand, within Psyr_2561 at 2975.591 kb on - strand, within Psyr_2561 at 2975.591 kb on - strand, within Psyr_2561 at 2975.591 kb on - strand, within Psyr_2561 at 2975.591 kb on - strand, within Psyr_2561 at 2975.594 kb on + strand, within Psyr_2561 at 2975.595 kb on - strand, within Psyr_2561 at 2975.973 kb on - strand, within Psyr_2562 at 2976.396 kb on + strand, within Psyr_2562 at 2976.397 kb on - strand, within Psyr_2562 at 2976.618 kb on + strand, within Psyr_2562 at 2976.619 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 2,974,144 + -1.5 2,974,145 - -0.3 2,974,270 + Psyr_2560 0.21 +0.1 2,974,284 + Psyr_2560 0.23 +0.8 2,974,597 + Psyr_2560 0.53 +0.3 2,974,598 - Psyr_2560 0.53 +1.0 2,974,598 - Psyr_2560 0.53 -0.3 2,974,598 - Psyr_2560 0.53 -2.2 2,974,598 - Psyr_2560 0.53 -0.4 2,974,598 - Psyr_2560 0.53 +2.0 2,974,691 + Psyr_2560 0.62 -0.4 2,974,692 - Psyr_2560 0.62 -0.2 2,974,692 - Psyr_2560 0.62 -0.2 2,974,692 - Psyr_2560 0.62 +0.6 2,974,692 - Psyr_2560 0.62 -0.6 2,974,695 + Psyr_2560 0.62 -0.1 2,974,695 + Psyr_2560 0.62 +0.9 2,974,696 - Psyr_2560 0.62 +0.6 2,974,696 - Psyr_2560 0.62 +0.1 2,974,696 - Psyr_2560 0.62 -0.1 2,975,103 + +0.0 2,975,104 - -0.1 2,975,163 + Psyr_2561 0.10 +0.7 2,975,188 + Psyr_2561 0.14 +0.0 2,975,264 - Psyr_2561 0.27 -0.5 2,975,264 - Psyr_2561 0.27 -1.2 2,975,590 + Psyr_2561 0.83 -0.9 2,975,591 - Psyr_2561 0.83 -0.4 2,975,591 - Psyr_2561 0.83 +0.3 2,975,591 - Psyr_2561 0.83 -1.5 2,975,591 - Psyr_2561 0.83 -2.0 2,975,594 + Psyr_2561 0.83 -0.3 2,975,595 - Psyr_2561 0.84 -1.2 2,975,973 - Psyr_2562 0.18 -1.5 2,976,396 + Psyr_2562 0.45 -0.9 2,976,397 - Psyr_2562 0.45 -2.7 2,976,618 + Psyr_2562 0.59 +0.6 2,976,619 - +0.3
Or see this region's nucleotide sequence