Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2433

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2432 and Psyr_2433 are separated by 168 nucleotidesPsyr_2433 and Psyr_2434 are separated by 84 nucleotides Psyr_2432: Psyr_2432 - diguanylate cyclase/phosphodiesterase, at 2,814,290 to 2,817,199 _2432 Psyr_2433: Psyr_2433 - conserved hypothetical protein, at 2,817,368 to 2,817,922 _2433 Psyr_2434: Psyr_2434 - Carbohydrate kinase, PfkB, at 2,818,007 to 2,818,945 _2434 Position (kb) 2817 2818Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2816.473 kb on + strand, within Psyr_2432at 2816.474 kb on - strand, within Psyr_2432at 2816.474 kb on - strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.643 kb on - strand, within Psyr_2432at 2816.643 kb on - strand, within Psyr_2432at 2816.643 kb on - strand, within Psyr_2432at 2816.643 kb on - strand, within Psyr_2432at 2816.643 kb on - strand, within Psyr_2432at 2816.723 kb on + strand, within Psyr_2432at 2816.723 kb on + strand, within Psyr_2432at 2816.758 kb on - strand, within Psyr_2432at 2816.758 kb on - strand, within Psyr_2432at 2816.758 kb on - strand, within Psyr_2432at 2816.930 kb on + strandat 2817.137 kb on + strandat 2817.137 kb on + strandat 2817.137 kb on + strandat 2817.137 kb on + strandat 2817.138 kb on - strandat 2817.138 kb on - strandat 2817.373 kb on + strandat 2817.373 kb on + strandat 2817.374 kb on - strandat 2817.557 kb on + strand, within Psyr_2433at 2817.557 kb on + strand, within Psyr_2433at 2817.558 kb on - strand, within Psyr_2433at 2817.558 kb on - strand, within Psyr_2433at 2817.607 kb on + strand, within Psyr_2433at 2817.608 kb on - strand, within Psyr_2433at 2817.705 kb on + strand, within Psyr_2433at 2817.788 kb on + strand, within Psyr_2433at 2817.789 kb on - strand, within Psyr_2433at 2817.789 kb on - strand, within Psyr_2433at 2817.789 kb on - strand, within Psyr_2433at 2817.789 kb on - strand, within Psyr_2433at 2817.985 kb on + strandat 2818.184 kb on - strandat 2818.303 kb on + strand, within Psyr_2434at 2818.304 kb on - strand, within Psyr_2434at 2818.304 kb on - strand, within Psyr_2434at 2818.647 kb on + strand, within Psyr_2434at 2818.647 kb on + strand, within Psyr_2434at 2818.647 kb on + strand, within Psyr_2434at 2818.648 kb on - strand, within Psyr_2434at 2818.648 kb on - strand, within Psyr_2434at 2818.648 kb on - strand, within Psyr_2434at 2818.771 kb on - strand, within Psyr_2434

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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2,816,473 + Psyr_2432 0.75 +1.7
2,816,474 - Psyr_2432 0.75 +0.3
2,816,474 - Psyr_2432 0.75 -1.0
2,816,642 + Psyr_2432 0.81 +0.7
2,816,642 + Psyr_2432 0.81 -0.2
2,816,642 + Psyr_2432 0.81 +0.5
2,816,642 + Psyr_2432 0.81 +0.6
2,816,642 + Psyr_2432 0.81 +0.1
2,816,643 - Psyr_2432 0.81 -0.2
2,816,643 - Psyr_2432 0.81 +0.5
2,816,643 - Psyr_2432 0.81 -0.1
2,816,643 - Psyr_2432 0.81 +1.4
2,816,643 - Psyr_2432 0.81 +0.1
2,816,723 + Psyr_2432 0.84 +2.3
2,816,723 + Psyr_2432 0.84 +0.3
2,816,758 - Psyr_2432 0.85 +0.6
2,816,758 - Psyr_2432 0.85 -1.7
2,816,758 - Psyr_2432 0.85 -1.9
2,816,930 + +0.3
2,817,137 + +0.4
2,817,137 + -0.4
2,817,137 + +0.7
2,817,137 + -0.1
2,817,138 - +0.9
2,817,138 - +1.2
2,817,373 + -0.7
2,817,373 + +0.1
2,817,374 - -1.1
2,817,557 + Psyr_2433 0.34 +1.1
2,817,557 + Psyr_2433 0.34 -1.3
2,817,558 - Psyr_2433 0.34 -0.5
2,817,558 - Psyr_2433 0.34 -0.7
2,817,607 + Psyr_2433 0.43 +1.4
2,817,608 - Psyr_2433 0.43 +1.9
2,817,705 + Psyr_2433 0.61 -1.3
2,817,788 + Psyr_2433 0.76 -1.3
2,817,789 - Psyr_2433 0.76 +0.3
2,817,789 - Psyr_2433 0.76 -1.6
2,817,789 - Psyr_2433 0.76 -1.1
2,817,789 - Psyr_2433 0.76 -1.7
2,817,985 + -0.5
2,818,184 - -1.0
2,818,303 + Psyr_2434 0.32 +0.2
2,818,304 - Psyr_2434 0.32 -3.6
2,818,304 - Psyr_2434 0.32 -1.5
2,818,647 + Psyr_2434 0.68 -0.9
2,818,647 + Psyr_2434 0.68 +0.2
2,818,647 + Psyr_2434 0.68 +1.9
2,818,648 - Psyr_2434 0.68 +0.3
2,818,648 - Psyr_2434 0.68 -0.5
2,818,648 - Psyr_2434 0.68 -0.1
2,818,771 - Psyr_2434 0.81 -0.1

Or see this region's nucleotide sequence