Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2291

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2290 and Psyr_2291 are separated by 697 nucleotidesPsyr_2291 and Psyr_2292 are separated by 70 nucleotides Psyr_2290: Psyr_2290 - TonB-dependent receptor:TonB-dependent receptor, at 2,659,700 to 2,662,102 _2290 Psyr_2291: Psyr_2291 - Class II aldolase/adducin, N-terminal, at 2,662,800 to 2,663,615 _2291 Psyr_2292: Psyr_2292 - L-glutaminase, at 2,663,686 to 2,664,594 _2292 Position (kb) 2662 2663 2664Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2661.867 kb on - strandat 2661.932 kb on + strandat 2662.035 kb on - strandat 2662.070 kb on + strandat 2662.070 kb on + strandat 2662.071 kb on - strandat 2662.073 kb on + strandat 2662.076 kb on + strandat 2662.077 kb on - strandat 2662.091 kb on + strandat 2662.091 kb on + strandat 2662.091 kb on + strandat 2662.091 kb on + strandat 2662.091 kb on + strandat 2662.091 kb on + strandat 2662.091 kb on + strandat 2662.091 kb on + strandat 2662.091 kb on + strandat 2662.092 kb on - strandat 2662.092 kb on - strandat 2662.092 kb on - strandat 2662.092 kb on - strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.094 kb on - strandat 2662.094 kb on - strandat 2662.144 kb on + strandat 2662.144 kb on + strandat 2662.145 kb on - strandat 2662.145 kb on - strandat 2662.145 kb on - strandat 2662.146 kb on + strandat 2662.147 kb on - strandat 2662.252 kb on + strandat 2662.253 kb on - strandat 2662.253 kb on - strandat 2662.587 kb on + strandat 2662.588 kb on - strandat 2662.610 kb on + strandat 2662.627 kb on - strandat 2662.650 kb on - strandat 2662.759 kb on + strandat 2662.759 kb on + strandat 2662.760 kb on - strandat 2662.797 kb on - strandat 2662.952 kb on + strand, within Psyr_2291at 2662.952 kb on + strand, within Psyr_2291at 2662.952 kb on + strand, within Psyr_2291at 2662.952 kb on + strand, within Psyr_2291at 2662.952 kb on + strand, within Psyr_2291at 2662.953 kb on - strand, within Psyr_2291at 2662.953 kb on - strand, within Psyr_2291at 2662.953 kb on - strand, within Psyr_2291at 2662.956 kb on + strand, within Psyr_2291at 2662.956 kb on + strand, within Psyr_2291at 2662.956 kb on + strand, within Psyr_2291at 2662.956 kb on + strand, within Psyr_2291at 2662.956 kb on + strand, within Psyr_2291at 2662.956 kb on + strand, within Psyr_2291at 2662.956 kb on + strand, within Psyr_2291at 2662.956 kb on + strand, within Psyr_2291at 2662.956 kb on + strand, within Psyr_2291at 2662.956 kb on + strand, within Psyr_2291at 2662.956 kb on + strand, within Psyr_2291at 2662.956 kb on + strand, within Psyr_2291at 2662.957 kb on - strand, within Psyr_2291at 2662.957 kb on - strand, within Psyr_2291at 2662.957 kb on - strand, within Psyr_2291at 2662.957 kb on - strand, within Psyr_2291at 2663.268 kb on + strand, within Psyr_2291at 2663.278 kb on - strand, within Psyr_2291at 2663.285 kb on + strand, within Psyr_2291at 2663.592 kb on - strandat 2663.654 kb on + strandat 2663.654 kb on + strandat 2663.654 kb on + strandat 2663.654 kb on + strandat 2663.654 kb on + strandat 2663.655 kb on - strandat 2663.720 kb on + strandat 2663.721 kb on - strandat 2663.721 kb on - strandat 2663.721 kb on - strandat 2663.755 kb on + strandat 2663.755 kb on + strandat 2663.755 kb on + strandat 2663.756 kb on - strandat 2663.806 kb on + strand, within Psyr_2292at 2664.241 kb on + strand, within Psyr_2292at 2664.241 kb on + strand, within Psyr_2292at 2664.242 kb on - strand, within Psyr_2292at 2664.397 kb on + strand, within Psyr_2292at 2664.597 kb on + strandat 2664.597 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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2,661,867 - -0.8
2,661,932 + +1.0
2,662,035 - +2.0
2,662,070 + -0.3
2,662,070 + +0.6
2,662,071 - +3.4
2,662,073 + -0.8
2,662,076 + -0.8
2,662,077 - +0.4
2,662,091 + +0.2
2,662,091 + +1.3
2,662,091 + -1.0
2,662,091 + +0.6
2,662,091 + +0.0
2,662,091 + +1.0
2,662,091 + -0.2
2,662,091 + -0.8
2,662,091 + +0.2
2,662,092 - -1.2
2,662,092 - +0.3
2,662,092 - +0.4
2,662,092 - +1.0
2,662,093 + -0.8
2,662,093 + +0.4
2,662,093 + -1.0
2,662,094 - -0.1
2,662,094 - +1.2
2,662,144 + +0.4
2,662,144 + -1.6
2,662,145 - +1.3
2,662,145 - +1.2
2,662,145 - -0.2
2,662,146 + -0.9
2,662,147 - -0.3
2,662,252 + -0.5
2,662,253 - +0.4
2,662,253 - +0.1
2,662,587 + +1.7
2,662,588 - -1.5
2,662,610 + +0.7
2,662,627 - -0.3
2,662,650 - +0.2
2,662,759 + -1.4
2,662,759 + +0.5
2,662,760 - -0.9
2,662,797 - +0.2
2,662,952 + Psyr_2291 0.19 +1.3
2,662,952 + Psyr_2291 0.19 +0.5
2,662,952 + Psyr_2291 0.19 -2.0
2,662,952 + Psyr_2291 0.19 +0.4
2,662,952 + Psyr_2291 0.19 -0.4
2,662,953 - Psyr_2291 0.19 +0.0
2,662,953 - Psyr_2291 0.19 -0.0
2,662,953 - Psyr_2291 0.19 -3.0
2,662,956 + Psyr_2291 0.19 -0.6
2,662,956 + Psyr_2291 0.19 +0.2
2,662,956 + Psyr_2291 0.19 -1.0
2,662,956 + Psyr_2291 0.19 -0.2
2,662,956 + Psyr_2291 0.19 +2.4
2,662,956 + Psyr_2291 0.19 +0.7
2,662,956 + Psyr_2291 0.19 -1.0
2,662,956 + Psyr_2291 0.19 +0.4
2,662,956 + Psyr_2291 0.19 +0.4
2,662,956 + Psyr_2291 0.19 -2.2
2,662,956 + Psyr_2291 0.19 +1.4
2,662,956 + Psyr_2291 0.19 -1.0
2,662,957 - Psyr_2291 0.19 +0.2
2,662,957 - Psyr_2291 0.19 -0.5
2,662,957 - Psyr_2291 0.19 +0.8
2,662,957 - Psyr_2291 0.19 -0.7
2,663,268 + Psyr_2291 0.57 -3.5
2,663,278 - Psyr_2291 0.59 -1.0
2,663,285 + Psyr_2291 0.59 -0.4
2,663,592 - -1.4
2,663,654 + +0.4
2,663,654 + -0.1
2,663,654 + +1.0
2,663,654 + -1.4
2,663,654 + +0.5
2,663,655 - -1.0
2,663,720 + -0.2
2,663,721 - -0.4
2,663,721 - +0.0
2,663,721 - +0.7
2,663,755 + -0.0
2,663,755 + -0.6
2,663,755 + -0.7
2,663,756 - -0.6
2,663,806 + Psyr_2292 0.13 -0.4
2,664,241 + Psyr_2292 0.61 -0.8
2,664,241 + Psyr_2292 0.61 -1.0
2,664,242 - Psyr_2292 0.61 -0.2
2,664,397 + Psyr_2292 0.78 -1.5
2,664,597 + -0.9
2,664,597 + -1.6

Or see this region's nucleotide sequence