Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2205 and Psyr_2206 are separated by 728 nucleotides Psyr_2206 and Psyr_2207 overlap by 4 nucleotides Psyr_2207 and Psyr_2208 are separated by 223 nucleotides
Psyr_2205: Psyr_2205 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 2,561,670 to 2,562,851
_2205
Psyr_2206: Psyr_2206 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 2,563,580 to 2,564,728
_2206
Psyr_2207: Psyr_2207 - ANTAR, at 2,564,725 to 2,565,357
_2207
Psyr_2208: Psyr_2208 - Amidase, at 2,565,581 to 2,567,116
_2208
Position (kb)
2563
2564
2565 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2562.857 kb on + strand at 2562.858 kb on - strand at 2563.034 kb on - strand at 2563.109 kb on - strand at 2563.158 kb on + strand at 2563.158 kb on + strand at 2563.158 kb on + strand at 2563.159 kb on - strand at 2563.201 kb on + strand at 2563.205 kb on + strand at 2563.205 kb on + strand at 2563.205 kb on + strand at 2563.206 kb on - strand at 2563.206 kb on - strand at 2563.215 kb on + strand at 2563.215 kb on + strand at 2563.216 kb on - strand at 2563.216 kb on - strand at 2563.216 kb on - strand at 2563.216 kb on - strand at 2563.225 kb on + strand at 2563.226 kb on - strand at 2563.575 kb on + strand at 2563.575 kb on + strand at 2563.576 kb on - strand at 2563.576 kb on - strand at 2563.602 kb on + strand at 2563.603 kb on - strand at 2563.603 kb on - strand at 2563.622 kb on - strand at 2563.893 kb on - strand, within Psyr_2206 at 2563.895 kb on + strand, within Psyr_2206 at 2563.895 kb on + strand, within Psyr_2206 at 2563.896 kb on - strand, within Psyr_2206 at 2563.928 kb on + strand, within Psyr_2206 at 2563.928 kb on + strand, within Psyr_2206 at 2563.928 kb on + strand, within Psyr_2206 at 2563.929 kb on - strand, within Psyr_2206 at 2563.929 kb on - strand, within Psyr_2206 at 2563.973 kb on + strand, within Psyr_2206 at 2563.973 kb on + strand, within Psyr_2206 at 2563.973 kb on + strand, within Psyr_2206 at 2563.974 kb on - strand, within Psyr_2206 at 2564.021 kb on + strand, within Psyr_2206 at 2564.021 kb on + strand, within Psyr_2206 at 2564.021 kb on + strand, within Psyr_2206 at 2564.022 kb on - strand, within Psyr_2206 at 2564.022 kb on - strand, within Psyr_2206 at 2564.096 kb on + strand, within Psyr_2206 at 2564.099 kb on + strand, within Psyr_2206 at 2564.099 kb on + strand, within Psyr_2206 at 2564.099 kb on + strand, within Psyr_2206 at 2564.100 kb on - strand, within Psyr_2206 at 2564.100 kb on - strand, within Psyr_2206 at 2564.217 kb on - strand, within Psyr_2206 at 2564.342 kb on + strand, within Psyr_2206 at 2564.342 kb on + strand, within Psyr_2206 at 2564.444 kb on + strand, within Psyr_2206 at 2564.444 kb on + strand, within Psyr_2206 at 2564.445 kb on - strand, within Psyr_2206 at 2564.445 kb on - strand, within Psyr_2206 at 2564.581 kb on + strand, within Psyr_2206 at 2564.581 kb on + strand, within Psyr_2206 at 2564.582 kb on - strand, within Psyr_2206 at 2564.585 kb on + strand, within Psyr_2206 at 2564.585 kb on + strand, within Psyr_2206 at 2564.585 kb on + strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.591 kb on + strand, within Psyr_2206 at 2565.253 kb on + strand, within Psyr_2207 at 2565.424 kb on + strand at 2565.443 kb on + strand at 2565.589 kb on - strand at 2565.722 kb on + strand at 2565.722 kb on + strand at 2565.722 kb on + strand at 2565.722 kb on + strand at 2565.722 kb on + strand at 2565.723 kb on - strand at 2565.723 kb on - strand at 2565.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 2,562,857 + -0.1 2,562,858 - -0.6 2,563,034 - -0.3 2,563,109 - +0.0 2,563,158 + +0.4 2,563,158 + -0.4 2,563,158 + -1.0 2,563,159 - +1.8 2,563,201 + -0.0 2,563,205 + +0.3 2,563,205 + +1.1 2,563,205 + -1.2 2,563,206 - -0.2 2,563,206 - -2.0 2,563,215 + -0.9 2,563,215 + +0.6 2,563,216 - -1.6 2,563,216 - +1.4 2,563,216 - -0.9 2,563,216 - +0.0 2,563,225 + +0.8 2,563,226 - +0.1 2,563,575 + +0.4 2,563,575 + -1.2 2,563,576 - -1.0 2,563,576 - +0.2 2,563,602 + +1.6 2,563,603 - +0.0 2,563,603 - +1.7 2,563,622 - +0.4 2,563,893 - Psyr_2206 0.27 -0.3 2,563,895 + Psyr_2206 0.27 +0.2 2,563,895 + Psyr_2206 0.27 +0.3 2,563,896 - Psyr_2206 0.28 +0.1 2,563,928 + Psyr_2206 0.30 -1.3 2,563,928 + Psyr_2206 0.30 +0.0 2,563,928 + Psyr_2206 0.30 +0.2 2,563,929 - Psyr_2206 0.30 -1.6 2,563,929 - Psyr_2206 0.30 +0.7 2,563,973 + Psyr_2206 0.34 +1.4 2,563,973 + Psyr_2206 0.34 +1.4 2,563,973 + Psyr_2206 0.34 +0.1 2,563,974 - Psyr_2206 0.34 -0.8 2,564,021 + Psyr_2206 0.38 +0.2 2,564,021 + Psyr_2206 0.38 -0.4 2,564,021 + Psyr_2206 0.38 -1.1 2,564,022 - Psyr_2206 0.38 +0.1 2,564,022 - Psyr_2206 0.38 +0.5 2,564,096 + Psyr_2206 0.45 -0.0 2,564,099 + Psyr_2206 0.45 +0.4 2,564,099 + Psyr_2206 0.45 -0.9 2,564,099 + Psyr_2206 0.45 -0.6 2,564,100 - Psyr_2206 0.45 +0.2 2,564,100 - Psyr_2206 0.45 +0.2 2,564,217 - Psyr_2206 0.55 +0.2 2,564,342 + Psyr_2206 0.66 -0.7 2,564,342 + Psyr_2206 0.66 -0.3 2,564,444 + Psyr_2206 0.75 +2.5 2,564,444 + Psyr_2206 0.75 -0.3 2,564,445 - Psyr_2206 0.75 +0.8 2,564,445 - Psyr_2206 0.75 +0.2 2,564,581 + Psyr_2206 0.87 +0.0 2,564,581 + Psyr_2206 0.87 +0.2 2,564,582 - Psyr_2206 0.87 +0.0 2,564,585 + Psyr_2206 0.87 +0.4 2,564,585 + Psyr_2206 0.87 -1.4 2,564,585 + Psyr_2206 0.87 -0.3 2,564,586 - Psyr_2206 0.88 +0.3 2,564,586 - Psyr_2206 0.88 +0.2 2,564,586 - Psyr_2206 0.88 +1.4 2,564,586 - Psyr_2206 0.88 -1.8 2,564,586 - Psyr_2206 0.88 +0.2 2,564,591 + Psyr_2206 0.88 -0.8 2,565,253 + Psyr_2207 0.83 -0.5 2,565,424 + -0.1 2,565,443 + +1.0 2,565,589 - +0.4 2,565,722 + +1.2 2,565,722 + +0.2 2,565,722 + +0.5 2,565,722 + -1.8 2,565,722 + +0.4 2,565,723 - +1.3 2,565,723 - +0.7 2,565,723 - +0.5
Or see this region's nucleotide sequence