Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2187

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2186 and Psyr_2187 are separated by 83 nucleotidesPsyr_2187 and Psyr_2188 are separated by 591 nucleotides Psyr_2186: Psyr_2186 - Senescence marker protein-30 (SMP-30), at 2,540,031 to 2,540,909 _2186 Psyr_2187: Psyr_2187 - General substrate transporter:Major facilitator superfamily, at 2,540,993 to 2,542,315 _2187 Psyr_2188: Psyr_2188 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer:CHASE3, at 2,542,907 to 2,544,529 _2188 Position (kb) 2540 2541 2542 2543Strain fitness (log2 ratio) -2 -1 0 1 2at 2540.063 kb on + strandat 2540.064 kb on - strandat 2540.110 kb on - strandat 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.257 kb on - strand, within Psyr_2186at 2540.257 kb on - strand, within Psyr_2186at 2540.257 kb on - strand, within Psyr_2186at 2540.257 kb on - strand, within Psyr_2186at 2540.258 kb on + strand, within Psyr_2186at 2540.506 kb on - strand, within Psyr_2186at 2540.506 kb on - strand, within Psyr_2186at 2540.541 kb on + strand, within Psyr_2186at 2541.002 kb on - strandat 2541.087 kb on - strandat 2541.284 kb on - strand, within Psyr_2187at 2541.284 kb on - strand, within Psyr_2187at 2541.424 kb on - strand, within Psyr_2187at 2541.518 kb on + strand, within Psyr_2187at 2541.518 kb on + strand, within Psyr_2187at 2541.519 kb on - strand, within Psyr_2187at 2541.540 kb on - strand, within Psyr_2187at 2541.540 kb on - strand, within Psyr_2187at 2541.626 kb on + strand, within Psyr_2187at 2541.627 kb on - strand, within Psyr_2187at 2541.684 kb on + strand, within Psyr_2187at 2541.684 kb on + strand, within Psyr_2187at 2541.684 kb on + strand, within Psyr_2187at 2541.685 kb on - strand, within Psyr_2187at 2541.685 kb on - strand, within Psyr_2187at 2541.776 kb on + strand, within Psyr_2187at 2541.776 kb on + strand, within Psyr_2187at 2541.776 kb on + strand, within Psyr_2187at 2541.776 kb on + strand, within Psyr_2187at 2541.776 kb on + strand, within Psyr_2187at 2541.777 kb on - strand, within Psyr_2187at 2541.777 kb on - strand, within Psyr_2187at 2541.777 kb on - strand, within Psyr_2187at 2541.777 kb on - strand, within Psyr_2187at 2541.777 kb on - strand, within Psyr_2187at 2541.777 kb on - strand, within Psyr_2187at 2541.777 kb on - strand, within Psyr_2187at 2541.806 kb on + strand, within Psyr_2187at 2541.812 kb on + strand, within Psyr_2187at 2541.812 kb on + strand, within Psyr_2187at 2541.812 kb on + strand, within Psyr_2187at 2541.812 kb on + strand, within Psyr_2187at 2541.813 kb on - strand, within Psyr_2187at 2541.813 kb on - strand, within Psyr_2187at 2541.813 kb on - strand, within Psyr_2187at 2541.813 kb on - strand, within Psyr_2187at 2541.980 kb on + strand, within Psyr_2187at 2541.980 kb on + strand, within Psyr_2187at 2541.981 kb on - strand, within Psyr_2187at 2541.981 kb on - strand, within Psyr_2187at 2542.058 kb on + strand, within Psyr_2187at 2542.058 kb on + strand, within Psyr_2187at 2542.058 kb on + strand, within Psyr_2187at 2542.058 kb on + strand, within Psyr_2187at 2542.058 kb on + strand, within Psyr_2187at 2542.058 kb on + strand, within Psyr_2187at 2542.059 kb on - strand, within Psyr_2187at 2542.059 kb on - strand, within Psyr_2187at 2542.059 kb on - strand, within Psyr_2187at 2542.062 kb on - strand, within Psyr_2187at 2542.062 kb on - strand, within Psyr_2187at 2542.213 kb on + strandat 2542.214 kb on - strandat 2542.214 kb on - strandat 2542.214 kb on - strandat 2542.369 kb on + strandat 2542.369 kb on + strandat 2542.370 kb on - strandat 2542.370 kb on - strandat 2542.374 kb on + strandat 2542.375 kb on - strandat 2542.375 kb on - strandat 2542.375 kb on - strandat 2542.561 kb on + strandat 2542.760 kb on - strandat 2542.850 kb on - strandat 2542.888 kb on + strandat 2542.941 kb on - strandat 2542.965 kb on + strandat 2542.965 kb on + strandat 2542.965 kb on + strandat 2542.965 kb on + strandat 2542.966 kb on - strandat 2542.995 kb on - strandat 2543.026 kb on + strandat 2543.026 kb on + strandat 2543.026 kb on + strandat 2543.027 kb on - strandat 2543.041 kb on + strandat 2543.042 kb on - strandat 2543.042 kb on - strandat 2543.042 kb on - strandat 2543.045 kb on + strandat 2543.045 kb on + strandat 2543.046 kb on - strandat 2543.046 kb on - strandat 2543.046 kb on - strandat 2543.046 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
remove
2,540,063 + +0.1
2,540,064 - -0.1
2,540,110 - -0.9
2,540,256 + Psyr_2186 0.26 -0.8
2,540,256 + Psyr_2186 0.26 -0.3
2,540,256 + Psyr_2186 0.26 -1.0
2,540,256 + Psyr_2186 0.26 +0.6
2,540,256 + Psyr_2186 0.26 -1.3
2,540,256 + Psyr_2186 0.26 -2.2
2,540,256 + Psyr_2186 0.26 +0.8
2,540,256 + Psyr_2186 0.26 +0.2
2,540,256 + Psyr_2186 0.26 -0.9
2,540,257 - Psyr_2186 0.26 +0.4
2,540,257 - Psyr_2186 0.26 +0.6
2,540,257 - Psyr_2186 0.26 +0.1
2,540,257 - Psyr_2186 0.26 +0.1
2,540,258 + Psyr_2186 0.26 +0.8
2,540,506 - Psyr_2186 0.54 -0.1
2,540,506 - Psyr_2186 0.54 +0.5
2,540,541 + Psyr_2186 0.58 +0.1
2,541,002 - -0.3
2,541,087 - -0.1
2,541,284 - Psyr_2187 0.22 +0.6
2,541,284 - Psyr_2187 0.22 -1.1
2,541,424 - Psyr_2187 0.33 -0.9
2,541,518 + Psyr_2187 0.40 -0.8
2,541,518 + Psyr_2187 0.40 +1.6
2,541,519 - Psyr_2187 0.40 +0.1
2,541,540 - Psyr_2187 0.41 +0.9
2,541,540 - Psyr_2187 0.41 -0.5
2,541,626 + Psyr_2187 0.48 -0.1
2,541,627 - Psyr_2187 0.48 +0.7
2,541,684 + Psyr_2187 0.52 -0.2
2,541,684 + Psyr_2187 0.52 -0.3
2,541,684 + Psyr_2187 0.52 -0.3
2,541,685 - Psyr_2187 0.52 -0.1
2,541,685 - Psyr_2187 0.52 +0.4
2,541,776 + Psyr_2187 0.59 -0.1
2,541,776 + Psyr_2187 0.59 -0.6
2,541,776 + Psyr_2187 0.59 -0.0
2,541,776 + Psyr_2187 0.59 +0.1
2,541,776 + Psyr_2187 0.59 -0.2
2,541,777 - Psyr_2187 0.59 -0.5
2,541,777 - Psyr_2187 0.59 +0.2
2,541,777 - Psyr_2187 0.59 -0.2
2,541,777 - Psyr_2187 0.59 -0.2
2,541,777 - Psyr_2187 0.59 -1.1
2,541,777 - Psyr_2187 0.59 +0.2
2,541,777 - Psyr_2187 0.59 -1.0
2,541,806 + Psyr_2187 0.61 -0.7
2,541,812 + Psyr_2187 0.62 +0.3
2,541,812 + Psyr_2187 0.62 -0.8
2,541,812 + Psyr_2187 0.62 +0.2
2,541,812 + Psyr_2187 0.62 -1.8
2,541,813 - Psyr_2187 0.62 -1.0
2,541,813 - Psyr_2187 0.62 -0.6
2,541,813 - Psyr_2187 0.62 -1.5
2,541,813 - Psyr_2187 0.62 -0.6
2,541,980 + Psyr_2187 0.75 +0.2
2,541,980 + Psyr_2187 0.75 +1.8
2,541,981 - Psyr_2187 0.75 -0.9
2,541,981 - Psyr_2187 0.75 -0.3
2,542,058 + Psyr_2187 0.80 -0.2
2,542,058 + Psyr_2187 0.80 +0.8
2,542,058 + Psyr_2187 0.80 -0.2
2,542,058 + Psyr_2187 0.80 -1.8
2,542,058 + Psyr_2187 0.80 +0.4
2,542,058 + Psyr_2187 0.80 +0.1
2,542,059 - Psyr_2187 0.81 +0.8
2,542,059 - Psyr_2187 0.81 +0.2
2,542,059 - Psyr_2187 0.81 -1.6
2,542,062 - Psyr_2187 0.81 -0.9
2,542,062 - Psyr_2187 0.81 -0.6
2,542,213 + +0.7
2,542,214 - +0.5
2,542,214 - -1.4
2,542,214 - +0.6
2,542,369 + +0.2
2,542,369 + +1.0
2,542,370 - -1.6
2,542,370 - +0.6
2,542,374 + -0.6
2,542,375 - -0.3
2,542,375 - -0.3
2,542,375 - +0.1
2,542,561 + -0.4
2,542,760 - +0.7
2,542,850 - -0.4
2,542,888 + -1.6
2,542,941 - -1.0
2,542,965 + +0.9
2,542,965 + +0.0
2,542,965 + +0.9
2,542,965 + -0.4
2,542,966 - +0.4
2,542,995 - +1.0
2,543,026 + +0.4
2,543,026 + +0.1
2,543,026 + -0.3
2,543,027 - +0.4
2,543,041 + -0.4
2,543,042 - -0.6
2,543,042 - -0.1
2,543,042 - -0.3
2,543,045 + +1.9
2,543,045 + +0.4
2,543,046 - +0.9
2,543,046 - -1.0
2,543,046 - -0.6
2,543,046 - -0.3

Or see this region's nucleotide sequence