Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1955

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1952 and Psyr_1953 overlap by 4 nucleotidesPsyr_1953 and Psyr_1954 overlap by 4 nucleotidesPsyr_1954 and Psyr_1955 overlap by 4 nucleotidesPsyr_1955 and Psyr_1956 are separated by 296 nucleotides Psyr_1952: Psyr_1952 - hypothetical protein, at 2,236,935 to 2,237,501 _1952 Psyr_1953: Psyr_1953 - conserved hypothetical protein, at 2,237,498 to 2,237,830 _1953 Psyr_1954: Psyr_1954 - conserved hypothetical protein, at 2,237,827 to 2,238,372 _1954 Psyr_1955: Psyr_1955 - Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix, at 2,238,369 to 2,239,592 _1955 Psyr_1956: Psyr_1956 - pyoverdine biosynthesis regulatory gene, putative, at 2,239,889 to 2,240,866 _1956 Position (kb) 2238 2239 2240Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2237.443 kb on + strand, within Psyr_1952at 2237.444 kb on - strand, within Psyr_1952at 2237.444 kb on - strand, within Psyr_1952at 2237.444 kb on - strand, within Psyr_1952at 2237.444 kb on - strand, within Psyr_1952at 2237.480 kb on + strandat 2237.481 kb on - strandat 2237.481 kb on - strandat 2237.481 kb on - strandat 2237.566 kb on - strand, within Psyr_1953at 2237.566 kb on - strand, within Psyr_1953at 2237.566 kb on - strand, within Psyr_1953at 2238.056 kb on + strandat 2238.057 kb on - strand, within Psyr_1954at 2238.495 kb on - strand, within Psyr_1955at 2238.538 kb on - strand, within Psyr_1955at 2238.915 kb on - strand, within Psyr_1955at 2239.150 kb on + strand, within Psyr_1955at 2239.273 kb on + strand, within Psyr_1955at 2239.273 kb on + strand, within Psyr_1955at 2239.328 kb on - strand, within Psyr_1955at 2239.328 kb on - strand, within Psyr_1955at 2239.665 kb on + strandat 2239.666 kb on - strandat 2239.666 kb on - strandat 2239.680 kb on - strandat 2239.815 kb on - strandat 2239.815 kb on - strandat 2240.030 kb on + strand, within Psyr_1956at 2240.030 kb on + strand, within Psyr_1956at 2240.030 kb on + strand, within Psyr_1956at 2240.031 kb on - strand, within Psyr_1956at 2240.126 kb on + strand, within Psyr_1956at 2240.127 kb on - strand, within Psyr_1956at 2240.171 kb on + strand, within Psyr_1956at 2240.172 kb on - strand, within Psyr_1956at 2240.262 kb on - strand, within Psyr_1956at 2240.375 kb on + strand, within Psyr_1956at 2240.375 kb on + strand, within Psyr_1956at 2240.375 kb on + strand, within Psyr_1956at 2240.376 kb on - strand, within Psyr_1956at 2240.376 kb on - strand, within Psyr_1956at 2240.383 kb on + strand, within Psyr_1956at 2240.384 kb on - strand, within Psyr_1956at 2240.388 kb on - strand, within Psyr_1956at 2240.388 kb on - strand, within Psyr_1956at 2240.422 kb on - strand, within Psyr_1956

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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2,237,443 + Psyr_1952 0.90 -0.2
2,237,444 - Psyr_1952 0.90 -0.2
2,237,444 - Psyr_1952 0.90 +0.6
2,237,444 - Psyr_1952 0.90 +0.4
2,237,444 - Psyr_1952 0.90 -1.6
2,237,480 + +0.8
2,237,481 - -0.2
2,237,481 - +0.5
2,237,481 - -0.1
2,237,566 - Psyr_1953 0.20 +0.1
2,237,566 - Psyr_1953 0.20 +0.5
2,237,566 - Psyr_1953 0.20 +2.4
2,238,056 + -0.4
2,238,057 - Psyr_1954 0.42 +0.0
2,238,495 - Psyr_1955 0.10 -1.1
2,238,538 - Psyr_1955 0.14 -0.8
2,238,915 - Psyr_1955 0.45 -0.6
2,239,150 + Psyr_1955 0.64 -0.2
2,239,273 + Psyr_1955 0.74 -0.4
2,239,273 + Psyr_1955 0.74 -0.4
2,239,328 - Psyr_1955 0.78 -1.6
2,239,328 - Psyr_1955 0.78 -0.3
2,239,665 + +0.3
2,239,666 - +0.7
2,239,666 - -0.1
2,239,680 - +0.8
2,239,815 - -0.2
2,239,815 - +0.9
2,240,030 + Psyr_1956 0.14 -0.1
2,240,030 + Psyr_1956 0.14 +0.2
2,240,030 + Psyr_1956 0.14 +0.2
2,240,031 - Psyr_1956 0.15 -0.4
2,240,126 + Psyr_1956 0.24 -1.2
2,240,127 - Psyr_1956 0.24 +0.1
2,240,171 + Psyr_1956 0.29 -2.4
2,240,172 - Psyr_1956 0.29 -0.4
2,240,262 - Psyr_1956 0.38 +0.2
2,240,375 + Psyr_1956 0.50 -0.3
2,240,375 + Psyr_1956 0.50 +0.8
2,240,375 + Psyr_1956 0.50 -3.8
2,240,376 - Psyr_1956 0.50 +0.9
2,240,376 - Psyr_1956 0.50 -0.4
2,240,383 + Psyr_1956 0.51 +1.3
2,240,384 - Psyr_1956 0.51 -0.4
2,240,388 - Psyr_1956 0.51 +1.2
2,240,388 - Psyr_1956 0.51 +0.8
2,240,422 - Psyr_1956 0.54 +0.0

Or see this region's nucleotide sequence