Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0973 and Psyr_0974 overlap by 4 nucleotides Psyr_0974 and Psyr_0975 are separated by 74 nucleotides Psyr_0975 and Psyr_0976 are separated by 85 nucleotides
Psyr_0973: Psyr_0973 - amino acid ABC transporter membrane protein, PAAT family, at 1,105,608 to 1,106,450
_0973
Psyr_0974: Psyr_0974 - amino acid ABC transporter substrate-binding protein, PAAT family, at 1,106,447 to 1,107,268
_0974
Psyr_0975: Psyr_0975 - homocysteine S-methyltransferase, at 1,107,343 to 1,108,275
_0975
Psyr_0976: Psyr_0976 - Malate:quinone-oxidoreductase, at 1,108,361 to 1,109,869
_0976
Position (kb) 1107
1108
1109 Strain fitness (log2 ratio) -1
0
1
2
3 at 1106.356 kb on + strand, within Psyr_0973 at 1106.589 kb on + strand, within Psyr_0974 at 1106.589 kb on + strand, within Psyr_0974 at 1106.590 kb on - strand, within Psyr_0974 at 1106.590 kb on - strand, within Psyr_0974 at 1106.590 kb on - strand, within Psyr_0974 at 1106.590 kb on - strand, within Psyr_0974 at 1106.590 kb on - strand, within Psyr_0974 at 1106.590 kb on - strand, within Psyr_0974 at 1106.728 kb on - strand, within Psyr_0974 at 1106.741 kb on + strand, within Psyr_0974 at 1106.741 kb on + strand, within Psyr_0974 at 1106.741 kb on + strand, within Psyr_0974 at 1106.741 kb on + strand, within Psyr_0974 at 1106.742 kb on - strand, within Psyr_0974 at 1106.742 kb on - strand, within Psyr_0974 at 1106.742 kb on - strand, within Psyr_0974 at 1106.742 kb on - strand, within Psyr_0974 at 1106.742 kb on - strand, within Psyr_0974 at 1106.742 kb on - strand, within Psyr_0974 at 1106.817 kb on + strand, within Psyr_0974 at 1106.818 kb on - strand, within Psyr_0974 at 1106.919 kb on + strand, within Psyr_0974 at 1106.920 kb on - strand, within Psyr_0974 at 1106.920 kb on - strand, within Psyr_0974 at 1106.920 kb on - strand, within Psyr_0974 at 1106.922 kb on + strand, within Psyr_0974 at 1106.923 kb on - strand, within Psyr_0974 at 1106.923 kb on - strand, within Psyr_0974 at 1107.261 kb on + strand at 1107.272 kb on + strand at 1107.273 kb on - strand at 1107.273 kb on - strand at 1107.293 kb on + strand at 1107.316 kb on - strand at 1107.319 kb on + strand at 1107.319 kb on + strand at 1107.320 kb on - strand at 1107.320 kb on - strand at 1107.320 kb on - strand at 1107.324 kb on + strand at 1107.324 kb on + strand at 1107.359 kb on + strand at 1107.359 kb on + strand at 1107.360 kb on - strand at 1107.363 kb on + strand at 1107.363 kb on + strand at 1107.364 kb on - strand at 1107.364 kb on - strand at 1107.365 kb on + strand at 1107.365 kb on + strand at 1107.365 kb on + strand at 1107.366 kb on - strand at 1107.366 kb on - strand at 1107.366 kb on - strand at 1107.366 kb on - strand at 1107.366 kb on - strand at 1107.366 kb on - strand at 1107.378 kb on + strand at 1107.378 kb on + strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.390 kb on + strand at 1107.390 kb on + strand at 1107.390 kb on + strand at 1107.391 kb on - strand at 1107.391 kb on - strand at 1107.391 kb on - strand at 1107.391 kb on - strand at 1107.391 kb on - strand at 1107.398 kb on + strand at 1107.398 kb on + strand at 1107.398 kb on + strand at 1107.399 kb on - strand at 1107.399 kb on - strand at 1107.399 kb on - strand at 1107.399 kb on - strand at 1107.520 kb on + strand, within Psyr_0975 at 1107.520 kb on + strand, within Psyr_0975 at 1107.520 kb on + strand, within Psyr_0975 at 1107.520 kb on + strand, within Psyr_0975 at 1107.520 kb on + strand, within Psyr_0975 at 1107.520 kb on + strand, within Psyr_0975 at 1107.521 kb on - strand, within Psyr_0975 at 1107.522 kb on + strand, within Psyr_0975 at 1107.552 kb on + strand, within Psyr_0975 at 1107.553 kb on - strand, within Psyr_0975 at 1107.560 kb on - strand, within Psyr_0975 at 1107.727 kb on + strand, within Psyr_0975 at 1107.727 kb on + strand, within Psyr_0975 at 1107.728 kb on - strand, within Psyr_0975 at 1107.744 kb on + strand, within Psyr_0975 at 1107.745 kb on - strand, within Psyr_0975 at 1107.784 kb on + strand, within Psyr_0975 at 1107.785 kb on - strand, within Psyr_0975 at 1107.785 kb on - strand, within Psyr_0975 at 1108.256 kb on + strand at 1108.257 kb on - strand at 1108.299 kb on - strand at 1108.299 kb on - strand at 1108.340 kb on + strand at 1108.438 kb on - strand at 1108.637 kb on + strand, within Psyr_0976 at 1108.917 kb on + strand, within Psyr_0976 at 1109.011 kb on - strand, within Psyr_0976 at 1109.171 kb on + strand, within Psyr_0976 at 1109.171 kb on + strand, within Psyr_0976 at 1109.171 kb on + strand, within Psyr_0976 at 1109.171 kb on + strand, within Psyr_0976 at 1109.172 kb on - strand, within Psyr_0976 at 1109.172 kb on - strand, within Psyr_0976 at 1109.172 kb on - strand, within Psyr_0976 at 1109.172 kb on - strand, within Psyr_0976
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 1,106,356 + Psyr_0973 0.89 -0.4 1,106,589 + Psyr_0974 0.17 -0.3 1,106,589 + Psyr_0974 0.17 -0.8 1,106,590 - Psyr_0974 0.17 -0.5 1,106,590 - Psyr_0974 0.17 -1.0 1,106,590 - Psyr_0974 0.17 +0.3 1,106,590 - Psyr_0974 0.17 +0.1 1,106,590 - Psyr_0974 0.17 -0.1 1,106,590 - Psyr_0974 0.17 -0.5 1,106,728 - Psyr_0974 0.34 +1.4 1,106,741 + Psyr_0974 0.36 +1.9 1,106,741 + Psyr_0974 0.36 +0.2 1,106,741 + Psyr_0974 0.36 +0.6 1,106,741 + Psyr_0974 0.36 +0.0 1,106,742 - Psyr_0974 0.36 +0.6 1,106,742 - Psyr_0974 0.36 +1.8 1,106,742 - Psyr_0974 0.36 +1.6 1,106,742 - Psyr_0974 0.36 -0.4 1,106,742 - Psyr_0974 0.36 -1.4 1,106,742 - Psyr_0974 0.36 -0.3 1,106,817 + Psyr_0974 0.45 -0.5 1,106,818 - Psyr_0974 0.45 -0.2 1,106,919 + Psyr_0974 0.57 +0.5 1,106,920 - Psyr_0974 0.58 -0.2 1,106,920 - Psyr_0974 0.58 +2.0 1,106,920 - Psyr_0974 0.58 +0.4 1,106,922 + Psyr_0974 0.58 -1.7 1,106,923 - Psyr_0974 0.58 -1.1 1,106,923 - Psyr_0974 0.58 -1.1 1,107,261 + -1.1 1,107,272 + +0.9 1,107,273 - -0.1 1,107,273 - -0.7 1,107,293 + -0.3 1,107,316 - -0.8 1,107,319 + +0.1 1,107,319 + +0.5 1,107,320 - -0.4 1,107,320 - -0.3 1,107,320 - -0.8 1,107,324 + +1.0 1,107,324 + +0.4 1,107,359 + -0.1 1,107,359 + +0.2 1,107,360 - -0.7 1,107,363 + +0.7 1,107,363 + +0.1 1,107,364 - +1.4 1,107,364 - +0.5 1,107,365 + -0.2 1,107,365 + +1.3 1,107,365 + -0.9 1,107,366 - +0.9 1,107,366 - -0.2 1,107,366 - -0.4 1,107,366 - -0.5 1,107,366 - +2.2 1,107,366 - -0.4 1,107,378 + -0.8 1,107,378 + +0.2 1,107,379 - -0.6 1,107,379 - +0.6 1,107,379 - -0.6 1,107,379 - +1.5 1,107,379 - +0.0 1,107,390 + -0.3 1,107,390 + -0.7 1,107,390 + -1.0 1,107,391 - +2.3 1,107,391 - +0.3 1,107,391 - -0.0 1,107,391 - +0.6 1,107,391 - -0.5 1,107,398 + +2.1 1,107,398 + +0.2 1,107,398 + +0.5 1,107,399 - -0.5 1,107,399 - +1.0 1,107,399 - +0.6 1,107,399 - -0.2 1,107,520 + Psyr_0975 0.19 +0.0 1,107,520 + Psyr_0975 0.19 +0.4 1,107,520 + Psyr_0975 0.19 -1.0 1,107,520 + Psyr_0975 0.19 -0.1 1,107,520 + Psyr_0975 0.19 +1.3 1,107,520 + Psyr_0975 0.19 -0.3 1,107,521 - Psyr_0975 0.19 +1.6 1,107,522 + Psyr_0975 0.19 +0.2 1,107,552 + Psyr_0975 0.22 +1.7 1,107,553 - Psyr_0975 0.23 -1.0 1,107,560 - Psyr_0975 0.23 -0.4 1,107,727 + Psyr_0975 0.41 -0.2 1,107,727 + Psyr_0975 0.41 +1.1 1,107,728 - Psyr_0975 0.41 +2.9 1,107,744 + Psyr_0975 0.43 +0.9 1,107,745 - Psyr_0975 0.43 +1.2 1,107,784 + Psyr_0975 0.47 +0.2 1,107,785 - Psyr_0975 0.47 +0.9 1,107,785 - Psyr_0975 0.47 +0.1 1,108,256 + +1.5 1,108,257 - -0.5 1,108,299 - -0.9 1,108,299 - -0.0 1,108,340 + +0.7 1,108,438 - +0.3 1,108,637 + Psyr_0976 0.18 +1.2 1,108,917 + Psyr_0976 0.37 +0.0 1,109,011 - Psyr_0976 0.43 +1.6 1,109,171 + Psyr_0976 0.54 +1.1 1,109,171 + Psyr_0976 0.54 -1.5 1,109,171 + Psyr_0976 0.54 -1.7 1,109,171 + Psyr_0976 0.54 -0.6 1,109,172 - Psyr_0976 0.54 -1.2 1,109,172 - Psyr_0976 0.54 -0.4 1,109,172 - Psyr_0976 0.54 +1.6 1,109,172 - Psyr_0976 0.54 -1.4
Or see this region's nucleotide sequence