Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0888 and Psyr_0889 are separated by 147 nucleotides Psyr_0889 and Psyr_0890 overlap by 4 nucleotides Psyr_0890 and Psyr_0891 are separated by 47 nucleotides Psyr_0891 and Psyr_0892 overlap by 1 nucleotides Psyr_0892 and Psyr_0893 are separated by 326 nucleotides
Psyr_0888: Psyr_0888 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,010,113 to 1,011,369
_0888
Psyr_0889: Psyr_0889 - SpoVT/AbrB-like protein, at 1,011,517 to 1,011,771
_0889
Psyr_0890: Psyr_0890 - PemK-like protein, at 1,011,768 to 1,012,115
_0890
Psyr_0891: Psyr_0891 - anti-ECFsigma factor, ChrR, at 1,012,163 to 1,012,825
_0891
Psyr_0892: Psyr_0892 - Sigma-70 region 2:Sigma-70 region 4, at 1,012,825 to 1,013,433
_0892
Psyr_0893: Psyr_0893 - hypothetical protein, at 1,013,760 to 1,014,335
_0893
Position (kb) 1012
1013 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1011.370 kb on + strand at 1011.370 kb on + strand at 1011.370 kb on + strand at 1011.370 kb on + strand at 1011.370 kb on + strand at 1011.371 kb on - strand at 1011.371 kb on - strand at 1011.371 kb on - strand at 1011.400 kb on + strand at 1011.420 kb on - strand at 1011.432 kb on - strand at 1011.439 kb on + strand at 1011.439 kb on + strand at 1011.443 kb on + strand at 1011.446 kb on + strand at 1011.447 kb on - strand at 1011.447 kb on - strand at 1011.447 kb on - strand at 1011.483 kb on + strand at 1011.483 kb on + strand at 1011.483 kb on + strand at 1011.487 kb on + strand at 1011.487 kb on + strand at 1011.487 kb on + strand at 1011.487 kb on + strand at 1011.488 kb on - strand at 1011.488 kb on - strand at 1011.488 kb on - strand at 1011.488 kb on - strand at 1011.488 kb on - strand at 1011.488 kb on - strand at 1011.488 kb on - strand at 1011.488 kb on - strand at 1011.488 kb on - strand at 1011.488 kb on - strand at 1011.492 kb on + strand at 1011.492 kb on + strand at 1011.492 kb on + strand at 1011.492 kb on + strand at 1011.493 kb on - strand at 1011.493 kb on - strand at 1011.493 kb on - strand at 1011.493 kb on - strand at 1011.493 kb on - strand at 1011.498 kb on + strand at 1011.498 kb on + strand at 1011.498 kb on + strand at 1011.498 kb on + strand at 1011.498 kb on + strand at 1011.499 kb on - strand at 1011.546 kb on + strand, within Psyr_0889 at 1011.578 kb on + strand, within Psyr_0889 at 1011.578 kb on + strand, within Psyr_0889 at 1011.578 kb on + strand, within Psyr_0889 at 1011.612 kb on + strand, within Psyr_0889 at 1011.613 kb on - strand, within Psyr_0889 at 1011.613 kb on - strand, within Psyr_0889 at 1011.670 kb on + strand, within Psyr_0889 at 1011.882 kb on + strand, within Psyr_0890 at 1011.882 kb on + strand, within Psyr_0890 at 1011.882 kb on + strand, within Psyr_0890 at 1011.883 kb on - strand, within Psyr_0890 at 1011.883 kb on - strand, within Psyr_0890 at 1011.885 kb on - strand, within Psyr_0890 at 1011.885 kb on - strand, within Psyr_0890 at 1011.901 kb on + strand, within Psyr_0890 at 1011.901 kb on + strand, within Psyr_0890 at 1011.901 kb on + strand, within Psyr_0890 at 1011.901 kb on + strand, within Psyr_0890 at 1011.901 kb on + strand, within Psyr_0890 at 1011.901 kb on + strand, within Psyr_0890 at 1011.902 kb on - strand, within Psyr_0890 at 1011.905 kb on + strand, within Psyr_0890 at 1011.905 kb on + strand, within Psyr_0890 at 1011.905 kb on + strand, within Psyr_0890 at 1011.905 kb on + strand, within Psyr_0890 at 1011.905 kb on + strand, within Psyr_0890 at 1011.906 kb on - strand, within Psyr_0890 at 1011.906 kb on - strand, within Psyr_0890 at 1011.906 kb on - strand, within Psyr_0890 at 1011.906 kb on - strand, within Psyr_0890 at 1011.911 kb on - strand, within Psyr_0890 at 1011.911 kb on - strand, within Psyr_0890 at 1011.911 kb on - strand, within Psyr_0890 at 1011.965 kb on - strand, within Psyr_0890 at 1012.126 kb on + strand at 1012.126 kb on + strand at 1012.127 kb on - strand at 1012.328 kb on + strand, within Psyr_0891 at 1012.328 kb on + strand, within Psyr_0891 at 1012.328 kb on + strand, within Psyr_0891 at 1012.328 kb on + strand, within Psyr_0891 at 1012.328 kb on + strand, within Psyr_0891 at 1012.328 kb on + strand, within Psyr_0891 at 1012.328 kb on + strand, within Psyr_0891 at 1012.328 kb on + strand, within Psyr_0891 at 1012.328 kb on + strand, within Psyr_0891 at 1012.328 kb on + strand, within Psyr_0891 at 1012.328 kb on + strand, within Psyr_0891 at 1012.329 kb on - strand, within Psyr_0891 at 1012.329 kb on - strand, within Psyr_0891 at 1012.329 kb on - strand, within Psyr_0891 at 1012.335 kb on + strand, within Psyr_0891 at 1012.338 kb on + strand, within Psyr_0891 at 1012.338 kb on + strand, within Psyr_0891 at 1012.339 kb on - strand, within Psyr_0891 at 1012.454 kb on + strand, within Psyr_0891 at 1012.464 kb on - strand, within Psyr_0891 at 1012.464 kb on - strand, within Psyr_0891 at 1012.490 kb on + strand, within Psyr_0891 at 1012.490 kb on + strand, within Psyr_0891 at 1012.490 kb on + strand, within Psyr_0891 at 1012.491 kb on - strand, within Psyr_0891 at 1012.491 kb on - strand, within Psyr_0891 at 1012.491 kb on - strand, within Psyr_0891 at 1012.491 kb on - strand, within Psyr_0891 at 1012.782 kb on + strand at 1012.782 kb on + strand at 1012.783 kb on - strand at 1012.783 kb on - strand at 1012.783 kb on - strand at 1012.783 kb on - strand at 1012.783 kb on - strand at 1012.783 kb on - strand at 1012.944 kb on - strand, within Psyr_0892 at 1013.025 kb on - strand, within Psyr_0892 at 1013.025 kb on - strand, within Psyr_0892 at 1013.123 kb on + strand, within Psyr_0892 at 1013.124 kb on - strand, within Psyr_0892 at 1013.124 kb on - strand, within Psyr_0892 at 1013.124 kb on - strand, within Psyr_0892 at 1013.297 kb on + strand, within Psyr_0892 at 1013.297 kb on + strand, within Psyr_0892 at 1013.297 kb on + strand, within Psyr_0892 at 1013.298 kb on - strand, within Psyr_0892 at 1013.298 kb on - strand, within Psyr_0892 at 1013.298 kb on - strand, within Psyr_0892 at 1013.298 kb on - strand, within Psyr_0892 at 1013.298 kb on - strand, within Psyr_0892 at 1013.425 kb on + strand at 1013.425 kb on + strand at 1013.425 kb on + strand at 1013.426 kb on - strand at 1013.426 kb on - strand at 1013.486 kb on + strand at 1013.486 kb on + strand at 1013.486 kb on + strand at 1013.486 kb on + strand at 1013.487 kb on - strand at 1013.487 kb on - strand at 1013.487 kb on - strand at 1013.487 kb on - strand at 1013.490 kb on + strand at 1013.512 kb on + strand at 1013.512 kb on + strand at 1013.512 kb on + strand at 1013.512 kb on + strand at 1013.512 kb on + strand at 1013.512 kb on + strand at 1013.513 kb on - strand at 1013.513 kb on - strand at 1013.513 kb on - strand at 1013.513 kb on - strand at 1013.677 kb on + strand at 1013.677 kb on + strand at 1013.677 kb on + strand at 1013.678 kb on - strand at 1013.696 kb on + strand at 1013.697 kb on - strand at 1013.697 kb on - strand at 1013.697 kb on - strand at 1013.719 kb on + strand at 1013.720 kb on - strand at 1013.765 kb on + strand at 1013.818 kb on + strand, within Psyr_0893 at 1013.818 kb on + strand, within Psyr_0893
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 1,011,370 + -0.8 1,011,370 + -1.2 1,011,370 + +0.2 1,011,370 + -3.2 1,011,370 + -0.3 1,011,371 - +0.6 1,011,371 - -0.1 1,011,371 - +1.0 1,011,400 + +0.2 1,011,420 - -0.7 1,011,432 - +2.2 1,011,439 + -0.3 1,011,439 + +0.7 1,011,443 + -0.6 1,011,446 + -0.6 1,011,447 - -0.0 1,011,447 - -0.0 1,011,447 - -0.2 1,011,483 + +2.4 1,011,483 + -1.9 1,011,483 + -0.3 1,011,487 + -0.0 1,011,487 + +1.5 1,011,487 + +2.9 1,011,487 + -1.7 1,011,488 - -1.0 1,011,488 - +0.5 1,011,488 - -1.0 1,011,488 - +0.4 1,011,488 - -1.7 1,011,488 - +0.3 1,011,488 - +1.2 1,011,488 - +0.6 1,011,488 - +0.5 1,011,488 - -0.8 1,011,492 + -2.2 1,011,492 + +0.3 1,011,492 + +0.8 1,011,492 + -1.7 1,011,493 - +0.9 1,011,493 - -0.9 1,011,493 - +0.2 1,011,493 - +0.6 1,011,493 - +2.2 1,011,498 + +0.1 1,011,498 + -0.8 1,011,498 + -0.0 1,011,498 + +0.6 1,011,498 + +0.6 1,011,499 - +0.3 1,011,546 + Psyr_0889 0.11 -0.5 1,011,578 + Psyr_0889 0.24 +0.1 1,011,578 + Psyr_0889 0.24 -0.8 1,011,578 + Psyr_0889 0.24 -0.3 1,011,612 + Psyr_0889 0.37 -0.0 1,011,613 - Psyr_0889 0.38 -2.6 1,011,613 - Psyr_0889 0.38 -0.4 1,011,670 + Psyr_0889 0.60 -1.7 1,011,882 + Psyr_0890 0.33 -0.0 1,011,882 + Psyr_0890 0.33 +2.9 1,011,882 + Psyr_0890 0.33 +0.6 1,011,883 - Psyr_0890 0.33 +0.2 1,011,883 - Psyr_0890 0.33 +1.2 1,011,885 - Psyr_0890 0.34 -2.0 1,011,885 - Psyr_0890 0.34 +2.9 1,011,901 + Psyr_0890 0.38 -1.3 1,011,901 + Psyr_0890 0.38 +0.3 1,011,901 + Psyr_0890 0.38 +0.3 1,011,901 + Psyr_0890 0.38 +0.7 1,011,901 + Psyr_0890 0.38 -0.1 1,011,901 + Psyr_0890 0.38 +0.4 1,011,902 - Psyr_0890 0.39 +0.9 1,011,905 + Psyr_0890 0.39 +0.7 1,011,905 + Psyr_0890 0.39 +0.4 1,011,905 + Psyr_0890 0.39 -0.7 1,011,905 + Psyr_0890 0.39 +0.8 1,011,905 + Psyr_0890 0.39 +0.4 1,011,906 - Psyr_0890 0.40 +0.8 1,011,906 - Psyr_0890 0.40 +0.9 1,011,906 - Psyr_0890 0.40 +1.3 1,011,906 - Psyr_0890 0.40 -0.7 1,011,911 - Psyr_0890 0.41 -0.2 1,011,911 - Psyr_0890 0.41 +0.7 1,011,911 - Psyr_0890 0.41 -0.4 1,011,965 - Psyr_0890 0.57 +0.1 1,012,126 + +1.0 1,012,126 + -0.2 1,012,127 - +0.5 1,012,328 + Psyr_0891 0.25 +0.6 1,012,328 + Psyr_0891 0.25 +1.0 1,012,328 + Psyr_0891 0.25 +1.1 1,012,328 + Psyr_0891 0.25 +2.2 1,012,328 + Psyr_0891 0.25 +0.6 1,012,328 + Psyr_0891 0.25 -0.3 1,012,328 + Psyr_0891 0.25 +0.4 1,012,328 + Psyr_0891 0.25 +0.3 1,012,328 + Psyr_0891 0.25 -0.4 1,012,328 + Psyr_0891 0.25 +1.4 1,012,328 + Psyr_0891 0.25 -0.5 1,012,329 - Psyr_0891 0.25 +0.5 1,012,329 - Psyr_0891 0.25 +0.1 1,012,329 - Psyr_0891 0.25 +0.8 1,012,335 + Psyr_0891 0.26 +1.8 1,012,338 + Psyr_0891 0.26 -0.8 1,012,338 + Psyr_0891 0.26 +0.3 1,012,339 - Psyr_0891 0.27 +0.5 1,012,454 + Psyr_0891 0.44 -0.1 1,012,464 - Psyr_0891 0.45 +0.1 1,012,464 - Psyr_0891 0.45 +0.5 1,012,490 + Psyr_0891 0.49 +1.8 1,012,490 + Psyr_0891 0.49 -1.6 1,012,490 + Psyr_0891 0.49 +0.7 1,012,491 - Psyr_0891 0.49 -0.1 1,012,491 - Psyr_0891 0.49 +0.1 1,012,491 - Psyr_0891 0.49 +0.4 1,012,491 - Psyr_0891 0.49 -0.5 1,012,782 + +2.6 1,012,782 + +0.8 1,012,783 - -0.4 1,012,783 - -0.2 1,012,783 - +0.1 1,012,783 - +1.3 1,012,783 - +0.1 1,012,783 - -0.1 1,012,944 - Psyr_0892 0.20 +0.1 1,013,025 - Psyr_0892 0.33 +0.4 1,013,025 - Psyr_0892 0.33 +1.8 1,013,123 + Psyr_0892 0.49 -1.4 1,013,124 - Psyr_0892 0.49 +1.4 1,013,124 - Psyr_0892 0.49 +0.4 1,013,124 - Psyr_0892 0.49 +0.6 1,013,297 + Psyr_0892 0.78 +1.4 1,013,297 + Psyr_0892 0.78 +1.2 1,013,297 + Psyr_0892 0.78 -0.3 1,013,298 - Psyr_0892 0.78 +0.6 1,013,298 - Psyr_0892 0.78 -0.8 1,013,298 - Psyr_0892 0.78 +3.4 1,013,298 - Psyr_0892 0.78 +1.2 1,013,298 - Psyr_0892 0.78 +0.1 1,013,425 + -1.5 1,013,425 + +0.2 1,013,425 + -1.2 1,013,426 - +1.1 1,013,426 - +0.0 1,013,486 + +1.4 1,013,486 + -0.6 1,013,486 + +0.6 1,013,486 + +0.4 1,013,487 - +0.3 1,013,487 - -0.3 1,013,487 - +1.1 1,013,487 - +0.6 1,013,490 + +0.9 1,013,512 + +0.2 1,013,512 + -0.1 1,013,512 + -0.3 1,013,512 + -0.4 1,013,512 + +0.9 1,013,512 + +1.2 1,013,513 - +1.2 1,013,513 - +1.2 1,013,513 - +0.2 1,013,513 - +0.2 1,013,677 + -0.6 1,013,677 + +0.5 1,013,677 + -0.4 1,013,678 - +0.0 1,013,696 + +1.3 1,013,697 - -1.2 1,013,697 - -0.3 1,013,697 - +0.6 1,013,719 + +0.3 1,013,720 - -1.0 1,013,765 + -1.4 1,013,818 + Psyr_0893 0.10 -1.0 1,013,818 + Psyr_0893 0.10 -0.6
Or see this region's nucleotide sequence