Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0865

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0863 and Psyr_0864 are separated by 108 nucleotidesPsyr_0864 and Psyr_0865 are separated by 267 nucleotidesPsyr_0865 and Psyr_0866 are separated by 65 nucleotidesPsyr_0866 and Psyr_0867 are separated by 86 nucleotides Psyr_0863: Psyr_0863 - PhnA protein, at 983,673 to 984,047 _0863 Psyr_0864: Psyr_0864 - Protein of unknown function DUF393, at 984,156 to 984,587 _0864 Psyr_0865: Psyr_0865 - General substrate transporter:Major facilitator superfamily, at 984,855 to 986,063 _0865 Psyr_0866: Psyr_0866 - CDP-diacylglycerol-choline O-phosphatidyltransferase, at 986,129 to 986,848 _0866 Psyr_0867: Psyr_0867 - conserved hypothetical protein, at 986,935 to 988,947 _0867 Position (kb) 984 985 986 987Strain fitness (log2 ratio) -2 -1 0 1 2 3at 984.353 kb on + strand, within Psyr_0864at 984.354 kb on - strand, within Psyr_0864at 984.354 kb on - strand, within Psyr_0864at 984.489 kb on + strand, within Psyr_0864at 984.490 kb on - strand, within Psyr_0864at 984.531 kb on + strand, within Psyr_0864at 984.531 kb on + strand, within Psyr_0864at 984.605 kb on + strandat 984.605 kb on + strandat 984.606 kb on - strandat 984.652 kb on + strandat 984.692 kb on + strandat 984.693 kb on - strandat 984.781 kb on + strandat 984.781 kb on + strandat 984.782 kb on - strandat 984.782 kb on - strandat 984.860 kb on - strandat 984.887 kb on + strandat 984.888 kb on - strandat 984.888 kb on - strandat 984.968 kb on + strandat 984.968 kb on + strandat 984.968 kb on + strandat 984.969 kb on - strandat 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.292 kb on + strand, within Psyr_0865at 985.310 kb on - strand, within Psyr_0865at 985.310 kb on - strand, within Psyr_0865at 985.396 kb on + strand, within Psyr_0865at 985.396 kb on + strand, within Psyr_0865at 985.397 kb on - strand, within Psyr_0865at 985.500 kb on + strand, within Psyr_0865at 985.500 kb on + strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.542 kb on + strand, within Psyr_0865at 985.543 kb on - strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.775 kb on + strand, within Psyr_0865at 985.776 kb on - strand, within Psyr_0865at 986.001 kb on + strandat 986.061 kb on + strandat 986.061 kb on + strandat 986.062 kb on - strandat 986.138 kb on - strandat 986.174 kb on - strandat 986.174 kb on - strandat 986.190 kb on + strandat 986.190 kb on + strandat 986.276 kb on + strand, within Psyr_0866at 986.276 kb on + strand, within Psyr_0866at 986.276 kb on + strand, within Psyr_0866at 986.277 kb on - strand, within Psyr_0866at 986.277 kb on - strand, within Psyr_0866at 986.412 kb on + strand, within Psyr_0866at 986.412 kb on + strand, within Psyr_0866at 986.412 kb on + strand, within Psyr_0866at 986.412 kb on + strand, within Psyr_0866at 986.413 kb on - strand, within Psyr_0866at 986.413 kb on - strand, within Psyr_0866at 986.413 kb on - strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.461 kb on - strand, within Psyr_0866at 986.461 kb on - strand, within Psyr_0866at 986.461 kb on - strand, within Psyr_0866at 986.461 kb on - strand, within Psyr_0866at 986.558 kb on + strand, within Psyr_0866at 986.559 kb on - strand, within Psyr_0866at 986.559 kb on - strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.563 kb on - strand, within Psyr_0866at 986.563 kb on - strand, within Psyr_0866at 986.568 kb on + strand, within Psyr_0866at 986.568 kb on + strand, within Psyr_0866at 986.568 kb on + strand, within Psyr_0866at 986.568 kb on + strand, within Psyr_0866at 986.569 kb on - strand, within Psyr_0866at 986.595 kb on + strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.781 kb on - strandat 986.868 kb on + strandat 986.868 kb on + strandat 986.868 kb on + strandat 986.869 kb on - strandat 986.869 kb on - strandat 986.869 kb on - strandat 986.869 kb on - strandat 986.909 kb on + strandat 986.931 kb on - strandat 987.008 kb on + strandat 987.008 kb on + strandat 987.008 kb on + strandat 987.008 kb on + strandat 987.009 kb on - strandat 987.009 kb on - strandat 987.033 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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984,353 + Psyr_0864 0.46 -0.7
984,354 - Psyr_0864 0.46 -0.7
984,354 - Psyr_0864 0.46 -0.1
984,489 + Psyr_0864 0.77 +0.2
984,490 - Psyr_0864 0.77 +0.3
984,531 + Psyr_0864 0.87 +0.7
984,531 + Psyr_0864 0.87 -0.7
984,605 + +0.2
984,605 + +0.0
984,606 - -0.3
984,652 + +2.0
984,692 + +0.6
984,693 - -0.3
984,781 + +0.7
984,781 + +0.1
984,782 - +1.3
984,782 - +0.7
984,860 - -1.2
984,887 + +0.6
984,888 - +0.8
984,888 - +0.7
984,968 + +0.2
984,968 + +0.9
984,968 + +0.3
984,969 - -0.1
985,026 + Psyr_0865 0.14 -0.3
985,026 + Psyr_0865 0.14 +0.4
985,026 + Psyr_0865 0.14 -0.2
985,026 + Psyr_0865 0.14 +1.9
985,026 + Psyr_0865 0.14 +0.7
985,026 + Psyr_0865 0.14 +0.1
985,026 + Psyr_0865 0.14 +0.4
985,026 + Psyr_0865 0.14 +0.3
985,026 + Psyr_0865 0.14 +0.6
985,027 - Psyr_0865 0.14 -0.1
985,027 - Psyr_0865 0.14 +0.3
985,027 - Psyr_0865 0.14 +1.3
985,027 - Psyr_0865 0.14 +0.9
985,027 - Psyr_0865 0.14 +0.1
985,027 - Psyr_0865 0.14 +0.8
985,027 - Psyr_0865 0.14 +0.7
985,027 - Psyr_0865 0.14 +0.2
985,027 - Psyr_0865 0.14 +0.7
985,027 - Psyr_0865 0.14 -0.9
985,027 - Psyr_0865 0.14 +1.3
985,027 - Psyr_0865 0.14 -1.2
985,027 - Psyr_0865 0.14 +0.8
985,027 - Psyr_0865 0.14 +0.2
985,027 - Psyr_0865 0.14 +0.6
985,027 - Psyr_0865 0.14 +0.7
985,027 - Psyr_0865 0.14 +2.0
985,292 + Psyr_0865 0.36 +0.2
985,310 - Psyr_0865 0.38 +0.1
985,310 - Psyr_0865 0.38 +0.3
985,396 + Psyr_0865 0.45 -0.4
985,396 + Psyr_0865 0.45 -0.8
985,397 - Psyr_0865 0.45 -1.3
985,500 + Psyr_0865 0.53 +0.8
985,500 + Psyr_0865 0.53 -0.2
985,501 - Psyr_0865 0.53 -0.7
985,501 - Psyr_0865 0.53 +1.3
985,501 - Psyr_0865 0.53 -2.1
985,542 + Psyr_0865 0.57 +0.2
985,543 - Psyr_0865 0.57 -0.6
985,548 + Psyr_0865 0.57 +0.3
985,548 + Psyr_0865 0.57 +1.4
985,548 + Psyr_0865 0.57 +0.2
985,548 + Psyr_0865 0.57 -2.4
985,548 + Psyr_0865 0.57 -0.1
985,548 + Psyr_0865 0.57 -0.4
985,548 + Psyr_0865 0.57 +1.8
985,548 + Psyr_0865 0.57 +0.1
985,548 + Psyr_0865 0.57 -0.4
985,548 + Psyr_0865 0.57 -0.6
985,548 + Psyr_0865 0.57 -0.1
985,548 + Psyr_0865 0.57 -0.9
985,548 + Psyr_0865 0.57 +0.7
985,548 + Psyr_0865 0.57 -1.8
985,548 + Psyr_0865 0.57 +2.0
985,549 - Psyr_0865 0.57 +1.0
985,549 - Psyr_0865 0.57 -0.7
985,549 - Psyr_0865 0.57 +2.9
985,549 - Psyr_0865 0.57 -0.5
985,549 - Psyr_0865 0.57 +2.6
985,549 - Psyr_0865 0.57 +0.1
985,549 - Psyr_0865 0.57 +2.0
985,549 - Psyr_0865 0.57 +1.0
985,549 - Psyr_0865 0.57 +0.7
985,549 - Psyr_0865 0.57 -0.7
985,775 + Psyr_0865 0.76 +0.1
985,776 - Psyr_0865 0.76 -2.2
986,001 + +1.5
986,061 + +0.2
986,061 + +1.8
986,062 - -0.3
986,138 - +0.7
986,174 - +0.5
986,174 - +0.7
986,190 + +3.7
986,190 + +0.2
986,276 + Psyr_0866 0.20 +1.6
986,276 + Psyr_0866 0.20 +0.9
986,276 + Psyr_0866 0.20 -0.2
986,277 - Psyr_0866 0.21 -0.4
986,277 - Psyr_0866 0.21 +1.5
986,412 + Psyr_0866 0.39 +0.8
986,412 + Psyr_0866 0.39 +1.2
986,412 + Psyr_0866 0.39 -0.6
986,412 + Psyr_0866 0.39 +0.4
986,413 - Psyr_0866 0.39 -2.0
986,413 - Psyr_0866 0.39 +0.7
986,413 - Psyr_0866 0.39 +1.1
986,460 + Psyr_0866 0.46 +0.8
986,460 + Psyr_0866 0.46 -2.2
986,460 + Psyr_0866 0.46 +2.2
986,460 + Psyr_0866 0.46 +1.9
986,460 + Psyr_0866 0.46 +0.7
986,460 + Psyr_0866 0.46 +0.5
986,460 + Psyr_0866 0.46 +0.4
986,461 - Psyr_0866 0.46 -0.0
986,461 - Psyr_0866 0.46 -0.4
986,461 - Psyr_0866 0.46 +0.8
986,461 - Psyr_0866 0.46 +0.9
986,558 + Psyr_0866 0.60 +0.3
986,559 - Psyr_0866 0.60 +0.7
986,559 - Psyr_0866 0.60 +0.8
986,560 + Psyr_0866 0.60 -1.4
986,560 + Psyr_0866 0.60 +1.4
986,560 + Psyr_0866 0.60 +1.3
986,560 + Psyr_0866 0.60 +0.1
986,560 + Psyr_0866 0.60 +0.7
986,560 + Psyr_0866 0.60 -0.4
986,560 + Psyr_0866 0.60 +0.1
986,560 + Psyr_0866 0.60 +1.3
986,560 + Psyr_0866 0.60 +1.6
986,561 - Psyr_0866 0.60 +1.1
986,561 - Psyr_0866 0.60 -0.7
986,561 - Psyr_0866 0.60 -0.4
986,561 - Psyr_0866 0.60 +3.2
986,561 - Psyr_0866 0.60 +1.6
986,561 - Psyr_0866 0.60 +0.2
986,562 + Psyr_0866 0.60 +0.6
986,562 + Psyr_0866 0.60 +0.7
986,562 + Psyr_0866 0.60 -0.2
986,562 + Psyr_0866 0.60 -0.1
986,562 + Psyr_0866 0.60 -1.2
986,562 + Psyr_0866 0.60 -0.4
986,563 - Psyr_0866 0.60 +0.9
986,563 - Psyr_0866 0.60 +1.6
986,568 + Psyr_0866 0.61 +0.4
986,568 + Psyr_0866 0.61 -0.2
986,568 + Psyr_0866 0.61 -0.6
986,568 + Psyr_0866 0.61 +1.3
986,569 - Psyr_0866 0.61 -0.2
986,595 + Psyr_0866 0.65 -0.8
986,596 - Psyr_0866 0.65 +1.5
986,596 - Psyr_0866 0.65 -0.3
986,596 - Psyr_0866 0.65 -0.4
986,596 - Psyr_0866 0.65 -0.7
986,596 - Psyr_0866 0.65 +0.3
986,596 - Psyr_0866 0.65 -0.4
986,781 - -1.1
986,868 + +2.0
986,868 + +0.7
986,868 + -0.3
986,869 - -0.7
986,869 - -1.1
986,869 - +0.0
986,869 - +0.2
986,909 + +0.3
986,931 - +0.8
987,008 + +0.3
987,008 + +0.9
987,008 + -0.2
987,008 + -0.4
987,009 - +1.3
987,009 - -0.3
987,033 + +0.6

Or see this region's nucleotide sequence