Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0671

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0670 and Psyr_0671 are separated by 285 nucleotidesPsyr_0671 and Psyr_0672 overlap by 4 nucleotides Psyr_0670: Psyr_0670 - Short-chain dehydrogenase/reductase SDR, at 759,438 to 760,163 _0670 Psyr_0671: Psyr_0671 - nucleoside ABC transporter membrane protein, at 760,449 to 761,378 _0671 Psyr_0672: Psyr_0672 - nucleoside ABC transporter membrane protein, at 761,375 to 762,475 _0672 Position (kb) 760 761 762Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 759.496 kb on + strandat 759.639 kb on - strand, within Psyr_0670at 759.639 kb on - strand, within Psyr_0670at 759.676 kb on + strand, within Psyr_0670at 759.676 kb on + strand, within Psyr_0670at 759.676 kb on + strand, within Psyr_0670at 759.676 kb on + strand, within Psyr_0670at 759.677 kb on - strand, within Psyr_0670at 760.020 kb on + strand, within Psyr_0670at 760.020 kb on + strand, within Psyr_0670at 760.021 kb on - strand, within Psyr_0670at 760.021 kb on - strand, within Psyr_0670at 760.021 kb on - strand, within Psyr_0670at 760.119 kb on - strandat 760.207 kb on + strandat 760.207 kb on + strandat 760.207 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.259 kb on - strandat 760.259 kb on - strandat 760.259 kb on - strandat 760.287 kb on + strandat 760.297 kb on + strandat 760.424 kb on - strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.441 kb on + strandat 760.441 kb on + strandat 760.441 kb on + strandat 760.441 kb on + strandat 760.441 kb on + strandat 760.442 kb on - strandat 760.442 kb on - strandat 760.442 kb on - strandat 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.639 kb on + strand, within Psyr_0671at 760.639 kb on + strand, within Psyr_0671at 760.640 kb on - strand, within Psyr_0671at 760.640 kb on - strand, within Psyr_0671at 760.744 kb on + strand, within Psyr_0671at 760.760 kb on - strand, within Psyr_0671at 760.939 kb on + strand, within Psyr_0671at 760.939 kb on + strand, within Psyr_0671at 760.939 kb on + strand, within Psyr_0671at 760.940 kb on - strand, within Psyr_0671at 760.940 kb on - strand, within Psyr_0671at 761.351 kb on + strandat 761.352 kb on - strandat 761.550 kb on + strand, within Psyr_0672at 761.550 kb on + strand, within Psyr_0672at 761.550 kb on + strand, within Psyr_0672at 761.550 kb on + strand, within Psyr_0672at 761.551 kb on - strand, within Psyr_0672at 761.551 kb on - strand, within Psyr_0672at 761.551 kb on - strand, within Psyr_0672at 761.551 kb on - strand, within Psyr_0672at 761.631 kb on + strand, within Psyr_0672at 761.631 kb on + strand, within Psyr_0672at 761.800 kb on - strand, within Psyr_0672at 761.868 kb on + strand, within Psyr_0672at 761.868 kb on + strand, within Psyr_0672at 761.868 kb on + strand, within Psyr_0672at 761.869 kb on - strand, within Psyr_0672at 761.869 kb on - strand, within Psyr_0672at 761.869 kb on - strand, within Psyr_0672at 761.988 kb on + strand, within Psyr_0672at 761.989 kb on - strand, within Psyr_0672at 761.989 kb on - strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.013 kb on - strand, within Psyr_0672at 762.013 kb on - strand, within Psyr_0672at 762.013 kb on - strand, within Psyr_0672at 762.025 kb on + strand, within Psyr_0672at 762.025 kb on + strand, within Psyr_0672at 762.025 kb on + strand, within Psyr_0672at 762.026 kb on - strand, within Psyr_0672at 762.154 kb on + strand, within Psyr_0672at 762.154 kb on + strand, within Psyr_0672at 762.154 kb on + strand, within Psyr_0672at 762.155 kb on - strand, within Psyr_0672at 762.155 kb on - strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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759,496 + -0.7
759,639 - Psyr_0670 0.28 +0.7
759,639 - Psyr_0670 0.28 +0.1
759,676 + Psyr_0670 0.33 -0.9
759,676 + Psyr_0670 0.33 +0.3
759,676 + Psyr_0670 0.33 -0.2
759,676 + Psyr_0670 0.33 +0.8
759,677 - Psyr_0670 0.33 -0.7
760,020 + Psyr_0670 0.80 +0.1
760,020 + Psyr_0670 0.80 +0.3
760,021 - Psyr_0670 0.80 -0.5
760,021 - Psyr_0670 0.80 +1.9
760,021 - Psyr_0670 0.80 -1.0
760,119 - +0.1
760,207 + -0.5
760,207 + -0.1
760,207 + +0.2
760,258 + +0.2
760,258 + +0.8
760,258 + -0.3
760,258 + -1.6
760,258 + +1.9
760,258 + -0.1
760,258 + +0.3
760,258 + -0.1
760,259 - -0.7
760,259 - +0.2
760,259 - +1.2
760,287 + -0.7
760,297 + +0.7
760,424 - -1.0
760,435 + +1.4
760,435 + +0.5
760,435 + +0.1
760,435 + +0.3
760,435 + -0.4
760,435 + +0.3
760,435 + -0.1
760,435 + -0.6
760,435 + +0.7
760,435 + +0.0
760,436 - -0.6
760,436 - +1.2
760,436 - +0.5
760,436 - -0.3
760,436 - -0.6
760,436 - +1.1
760,436 - +0.3
760,436 - -0.7
760,441 + -1.1
760,441 + +0.2
760,441 + +3.1
760,441 + -0.5
760,441 + +0.1
760,442 - +0.8
760,442 - +0.3
760,442 - +0.2
760,552 + Psyr_0671 0.11 +0.1
760,552 + Psyr_0671 0.11 +0.0
760,552 + Psyr_0671 0.11 +1.6
760,552 + Psyr_0671 0.11 +0.5
760,552 + Psyr_0671 0.11 +0.1
760,552 + Psyr_0671 0.11 -0.5
760,552 + Psyr_0671 0.11 +0.5
760,553 - Psyr_0671 0.11 +0.2
760,553 - Psyr_0671 0.11 +2.2
760,553 - Psyr_0671 0.11 +0.8
760,553 - Psyr_0671 0.11 -0.1
760,553 - Psyr_0671 0.11 +0.4
760,553 - Psyr_0671 0.11 +1.1
760,553 - Psyr_0671 0.11 +0.9
760,639 + Psyr_0671 0.20 -0.5
760,639 + Psyr_0671 0.20 -0.5
760,640 - Psyr_0671 0.21 +1.0
760,640 - Psyr_0671 0.21 +1.1
760,744 + Psyr_0671 0.32 -0.9
760,760 - Psyr_0671 0.33 -0.3
760,939 + Psyr_0671 0.53 +1.9
760,939 + Psyr_0671 0.53 +0.3
760,939 + Psyr_0671 0.53 -0.8
760,940 - Psyr_0671 0.53 -0.4
760,940 - Psyr_0671 0.53 -0.0
761,351 + -0.2
761,352 - +0.2
761,550 + Psyr_0672 0.16 +0.3
761,550 + Psyr_0672 0.16 +0.3
761,550 + Psyr_0672 0.16 +1.2
761,550 + Psyr_0672 0.16 -0.8
761,551 - Psyr_0672 0.16 -0.4
761,551 - Psyr_0672 0.16 +1.5
761,551 - Psyr_0672 0.16 +0.9
761,551 - Psyr_0672 0.16 +1.1
761,631 + Psyr_0672 0.23 -0.8
761,631 + Psyr_0672 0.23 -0.6
761,800 - Psyr_0672 0.39 +0.8
761,868 + Psyr_0672 0.45 +0.1
761,868 + Psyr_0672 0.45 +1.4
761,868 + Psyr_0672 0.45 -0.1
761,869 - Psyr_0672 0.45 +2.2
761,869 - Psyr_0672 0.45 +0.2
761,869 - Psyr_0672 0.45 +0.9
761,988 + Psyr_0672 0.56 +0.7
761,989 - Psyr_0672 0.56 -0.1
761,989 - Psyr_0672 0.56 +0.3
762,012 + Psyr_0672 0.58 -2.8
762,012 + Psyr_0672 0.58 -0.3
762,012 + Psyr_0672 0.58 +1.8
762,012 + Psyr_0672 0.58 -0.3
762,012 + Psyr_0672 0.58 +1.2
762,013 - Psyr_0672 0.58 +0.2
762,013 - Psyr_0672 0.58 +3.4
762,013 - Psyr_0672 0.58 -0.2
762,025 + Psyr_0672 0.59 +0.6
762,025 + Psyr_0672 0.59 +0.2
762,025 + Psyr_0672 0.59 -0.6
762,026 - Psyr_0672 0.59 +0.6
762,154 + Psyr_0672 0.71 -0.3
762,154 + Psyr_0672 0.71 +0.3
762,154 + Psyr_0672 0.71 -1.2
762,155 - Psyr_0672 0.71 +0.5
762,155 - Psyr_0672 0.71 +0.3
762,212 + Psyr_0672 0.76 +0.1
762,212 + Psyr_0672 0.76 +1.6
762,212 + Psyr_0672 0.76 +0.6
762,212 + Psyr_0672 0.76 +0.0
762,212 + Psyr_0672 0.76 +0.6
762,212 + Psyr_0672 0.76 +0.6
762,212 + Psyr_0672 0.76 +0.2
762,212 + Psyr_0672 0.76 +0.4
762,212 + Psyr_0672 0.76 -0.5
762,212 + Psyr_0672 0.76 -1.6
762,212 + Psyr_0672 0.76 +0.5
762,212 + Psyr_0672 0.76 +0.4
762,212 + Psyr_0672 0.76 -0.6
762,212 + Psyr_0672 0.76 +0.8
762,212 + Psyr_0672 0.76 -1.9
762,212 + Psyr_0672 0.76 +0.2
762,212 + Psyr_0672 0.76 +1.1
762,212 + Psyr_0672 0.76 -0.8
762,212 + Psyr_0672 0.76 -0.5
762,213 - Psyr_0672 0.76 -0.9
762,213 - Psyr_0672 0.76 +1.1
762,213 - Psyr_0672 0.76 +0.4
762,213 - Psyr_0672 0.76 -0.5
762,213 - Psyr_0672 0.76 -1.0
762,213 - Psyr_0672 0.76 -0.5
762,213 - Psyr_0672 0.76 +0.8
762,213 - Psyr_0672 0.76 -0.5
762,213 - Psyr_0672 0.76 -0.6
762,213 - Psyr_0672 0.76 -0.5
762,213 - Psyr_0672 0.76 +2.0
762,213 - Psyr_0672 0.76 -0.3
762,213 - Psyr_0672 0.76 -0.2
762,213 - Psyr_0672 0.76 -1.0
762,213 - Psyr_0672 0.76 +0.4

Or see this region's nucleotide sequence