Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0119

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0118 and Psyr_0119 are separated by 84 nucleotidesPsyr_0119 and Psyr_0120 are separated by 343 nucleotides Psyr_0118: Psyr_0118 - hypothetical protein, at 128,434 to 129,486 _0118 Psyr_0119: Psyr_0119 - CDS, at 129,571 to 129,822 _0119 Psyr_0120: Psyr_0120 - Short-chain dehydrogenase/reductase SDR, at 130,166 to 130,936 _0120 Position (kb) 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 128.591 kb on + strand, within Psyr_0118at 128.591 kb on + strand, within Psyr_0118at 128.591 kb on + strand, within Psyr_0118at 128.591 kb on + strand, within Psyr_0118at 128.591 kb on + strand, within Psyr_0118at 128.591 kb on + strand, within Psyr_0118at 128.592 kb on - strand, within Psyr_0118at 128.592 kb on - strand, within Psyr_0118at 128.592 kb on - strand, within Psyr_0118at 128.592 kb on - strand, within Psyr_0118at 128.592 kb on - strand, within Psyr_0118at 128.594 kb on + strand, within Psyr_0118at 128.594 kb on + strand, within Psyr_0118at 128.594 kb on + strand, within Psyr_0118at 128.595 kb on - strand, within Psyr_0118at 128.595 kb on - strand, within Psyr_0118at 128.603 kb on + strand, within Psyr_0118at 128.603 kb on + strand, within Psyr_0118at 128.603 kb on + strand, within Psyr_0118at 128.604 kb on - strand, within Psyr_0118at 128.607 kb on - strand, within Psyr_0118at 128.618 kb on - strand, within Psyr_0118at 128.878 kb on + strand, within Psyr_0118at 128.878 kb on + strand, within Psyr_0118at 128.879 kb on - strand, within Psyr_0118at 128.879 kb on - strand, within Psyr_0118at 128.879 kb on - strand, within Psyr_0118at 128.926 kb on + strand, within Psyr_0118at 128.927 kb on - strand, within Psyr_0118at 128.960 kb on + strand, within Psyr_0118at 128.961 kb on - strand, within Psyr_0118at 129.003 kb on + strand, within Psyr_0118at 129.003 kb on + strand, within Psyr_0118at 129.004 kb on - strand, within Psyr_0118at 129.061 kb on - strand, within Psyr_0118at 129.069 kb on + strand, within Psyr_0118at 129.069 kb on + strand, within Psyr_0118at 129.069 kb on + strand, within Psyr_0118at 129.069 kb on + strand, within Psyr_0118at 129.069 kb on + strand, within Psyr_0118at 129.069 kb on + strand, within Psyr_0118at 129.070 kb on - strand, within Psyr_0118at 129.070 kb on - strand, within Psyr_0118at 129.070 kb on - strand, within Psyr_0118at 129.070 kb on - strand, within Psyr_0118at 129.070 kb on - strand, within Psyr_0118at 129.074 kb on - strand, within Psyr_0118at 129.140 kb on - strand, within Psyr_0118at 129.140 kb on - strand, within Psyr_0118at 129.176 kb on + strand, within Psyr_0118at 129.176 kb on + strand, within Psyr_0118at 129.176 kb on + strand, within Psyr_0118at 129.176 kb on + strand, within Psyr_0118at 129.176 kb on + strand, within Psyr_0118at 129.177 kb on - strand, within Psyr_0118at 129.177 kb on - strand, within Psyr_0118at 129.232 kb on + strand, within Psyr_0118at 129.267 kb on - strand, within Psyr_0118at 129.283 kb on + strand, within Psyr_0118at 129.283 kb on + strand, within Psyr_0118at 129.284 kb on - strand, within Psyr_0118at 129.284 kb on - strand, within Psyr_0118at 129.384 kb on - strandat 129.392 kb on - strandat 129.394 kb on - strandat 129.433 kb on + strandat 129.433 kb on + strandat 129.433 kb on + strandat 129.433 kb on + strandat 129.433 kb on + strandat 129.434 kb on - strandat 129.623 kb on + strand, within Psyr_0119at 129.623 kb on + strand, within Psyr_0119at 129.623 kb on + strand, within Psyr_0119at 129.624 kb on - strand, within Psyr_0119at 129.624 kb on - strand, within Psyr_0119at 129.640 kb on + strand, within Psyr_0119at 129.640 kb on + strand, within Psyr_0119at 129.716 kb on - strand, within Psyr_0119at 129.743 kb on + strand, within Psyr_0119at 129.847 kb on + strandat 129.847 kb on + strandat 129.858 kb on + strandat 129.937 kb on + strandat 129.937 kb on + strandat 129.937 kb on + strandat 129.937 kb on + strandat 129.937 kb on + strandat 129.940 kb on - strandat 129.955 kb on + strandat 129.956 kb on - strandat 130.000 kb on + strandat 130.000 kb on + strandat 130.000 kb on + strandat 130.000 kb on + strandat 130.003 kb on - strandat 130.003 kb on - strandat 130.058 kb on + strandat 130.059 kb on - strandat 130.110 kb on + strandat 130.110 kb on + strandat 130.111 kb on - strandat 130.111 kb on - strandat 130.111 kb on - strandat 130.111 kb on - strandat 130.111 kb on - strandat 130.165 kb on + strandat 130.166 kb on - strandat 130.228 kb on + strandat 130.229 kb on - strandat 130.451 kb on - strand, within Psyr_0120at 130.455 kb on + strand, within Psyr_0120at 130.455 kb on + strand, within Psyr_0120at 130.456 kb on - strand, within Psyr_0120at 130.456 kb on - strand, within Psyr_0120at 130.456 kb on - strand, within Psyr_0120at 130.456 kb on - strand, within Psyr_0120at 130.459 kb on + strand, within Psyr_0120at 130.459 kb on + strand, within Psyr_0120at 130.460 kb on - strand, within Psyr_0120at 130.460 kb on - strand, within Psyr_0120at 130.460 kb on - strand, within Psyr_0120at 130.460 kb on - strand, within Psyr_0120at 130.460 kb on - strand, within Psyr_0120at 130.460 kb on - strand, within Psyr_0120at 130.575 kb on + strand, within Psyr_0120at 130.575 kb on + strand, within Psyr_0120at 130.575 kb on + strand, within Psyr_0120at 130.575 kb on + strand, within Psyr_0120at 130.575 kb on + strand, within Psyr_0120at 130.576 kb on - strand, within Psyr_0120at 130.576 kb on - strand, within Psyr_0120at 130.670 kb on + strand, within Psyr_0120at 130.670 kb on + strand, within Psyr_0120at 130.670 kb on + strand, within Psyr_0120at 130.670 kb on + strand, within Psyr_0120at 130.671 kb on - strand, within Psyr_0120at 130.747 kb on + strand, within Psyr_0120at 130.748 kb on - strand, within Psyr_0120at 130.748 kb on - strand, within Psyr_0120at 130.748 kb on - strand, within Psyr_0120at 130.761 kb on + strand, within Psyr_0120at 130.761 kb on + strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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128,591 + Psyr_0118 0.15 -0.1
128,591 + Psyr_0118 0.15 +0.7
128,591 + Psyr_0118 0.15 -0.5
128,591 + Psyr_0118 0.15 -0.7
128,591 + Psyr_0118 0.15 -0.0
128,591 + Psyr_0118 0.15 +0.7
128,592 - Psyr_0118 0.15 -0.6
128,592 - Psyr_0118 0.15 -1.5
128,592 - Psyr_0118 0.15 -0.3
128,592 - Psyr_0118 0.15 +1.7
128,592 - Psyr_0118 0.15 -1.2
128,594 + Psyr_0118 0.15 -0.9
128,594 + Psyr_0118 0.15 +0.4
128,594 + Psyr_0118 0.15 +0.3
128,595 - Psyr_0118 0.15 -0.8
128,595 - Psyr_0118 0.15 +2.1
128,603 + Psyr_0118 0.16 +0.6
128,603 + Psyr_0118 0.16 -0.3
128,603 + Psyr_0118 0.16 -0.8
128,604 - Psyr_0118 0.16 +1.4
128,607 - Psyr_0118 0.16 -0.4
128,618 - Psyr_0118 0.17 +0.3
128,878 + Psyr_0118 0.42 -1.4
128,878 + Psyr_0118 0.42 -0.2
128,879 - Psyr_0118 0.42 -1.1
128,879 - Psyr_0118 0.42 +0.4
128,879 - Psyr_0118 0.42 -0.2
128,926 + Psyr_0118 0.47 -1.0
128,927 - Psyr_0118 0.47 +0.6
128,960 + Psyr_0118 0.50 -0.8
128,961 - Psyr_0118 0.50 -0.6
129,003 + Psyr_0118 0.54 -0.2
129,003 + Psyr_0118 0.54 -0.5
129,004 - Psyr_0118 0.54 +0.7
129,061 - Psyr_0118 0.60 +0.1
129,069 + Psyr_0118 0.60 +0.6
129,069 + Psyr_0118 0.60 +0.9
129,069 + Psyr_0118 0.60 -0.6
129,069 + Psyr_0118 0.60 -1.2
129,069 + Psyr_0118 0.60 -1.3
129,069 + Psyr_0118 0.60 +0.6
129,070 - Psyr_0118 0.60 -0.6
129,070 - Psyr_0118 0.60 +0.5
129,070 - Psyr_0118 0.60 -0.3
129,070 - Psyr_0118 0.60 +0.1
129,070 - Psyr_0118 0.60 +0.7
129,074 - Psyr_0118 0.61 -0.5
129,140 - Psyr_0118 0.67 -0.2
129,140 - Psyr_0118 0.67 +0.8
129,176 + Psyr_0118 0.70 +0.8
129,176 + Psyr_0118 0.70 +0.1
129,176 + Psyr_0118 0.70 -0.4
129,176 + Psyr_0118 0.70 -0.1
129,176 + Psyr_0118 0.70 +0.8
129,177 - Psyr_0118 0.71 -0.4
129,177 - Psyr_0118 0.71 +0.4
129,232 + Psyr_0118 0.76 -0.6
129,267 - Psyr_0118 0.79 -0.1
129,283 + Psyr_0118 0.81 +0.8
129,283 + Psyr_0118 0.81 +0.8
129,284 - Psyr_0118 0.81 +0.3
129,284 - Psyr_0118 0.81 +1.1
129,384 - +0.0
129,392 - -0.2
129,394 - -0.1
129,433 + -0.3
129,433 + +0.4
129,433 + +0.4
129,433 + +0.4
129,433 + -0.3
129,434 - +0.1
129,623 + Psyr_0119 0.21 -0.3
129,623 + Psyr_0119 0.21 -1.1
129,623 + Psyr_0119 0.21 +1.4
129,624 - Psyr_0119 0.21 -1.2
129,624 - Psyr_0119 0.21 +0.6
129,640 + Psyr_0119 0.27 +0.9
129,640 + Psyr_0119 0.27 -2.4
129,716 - Psyr_0119 0.58 -0.9
129,743 + Psyr_0119 0.68 -0.6
129,847 + +0.2
129,847 + -1.4
129,858 + +0.3
129,937 + +0.5
129,937 + +2.5
129,937 + +0.5
129,937 + -0.1
129,937 + +1.6
129,940 - -3.2
129,955 + +0.0
129,956 - +0.8
130,000 + -0.1
130,000 + -0.2
130,000 + +1.1
130,000 + -0.3
130,003 - -1.1
130,003 - +0.4
130,058 + -0.1
130,059 - +1.0
130,110 + +0.1
130,110 + +0.3
130,111 - -0.5
130,111 - -0.8
130,111 - -0.3
130,111 - +0.6
130,111 - +0.2
130,165 + -0.8
130,166 - -0.0
130,228 + -0.4
130,229 - -0.8
130,451 - Psyr_0120 0.37 -0.1
130,455 + Psyr_0120 0.37 +2.1
130,455 + Psyr_0120 0.37 -0.4
130,456 - Psyr_0120 0.38 -0.0
130,456 - Psyr_0120 0.38 -1.2
130,456 - Psyr_0120 0.38 -1.2
130,456 - Psyr_0120 0.38 -0.4
130,459 + Psyr_0120 0.38 -0.0
130,459 + Psyr_0120 0.38 -0.0
130,460 - Psyr_0120 0.38 +0.6
130,460 - Psyr_0120 0.38 -1.1
130,460 - Psyr_0120 0.38 +1.8
130,460 - Psyr_0120 0.38 -0.1
130,460 - Psyr_0120 0.38 -0.7
130,460 - Psyr_0120 0.38 +0.9
130,575 + Psyr_0120 0.53 -1.6
130,575 + Psyr_0120 0.53 -0.8
130,575 + Psyr_0120 0.53 -1.0
130,575 + Psyr_0120 0.53 +0.3
130,575 + Psyr_0120 0.53 -0.9
130,576 - Psyr_0120 0.53 +0.6
130,576 - Psyr_0120 0.53 -0.4
130,670 + Psyr_0120 0.65 -0.9
130,670 + Psyr_0120 0.65 +0.1
130,670 + Psyr_0120 0.65 +0.5
130,670 + Psyr_0120 0.65 +0.2
130,671 - Psyr_0120 0.65 -0.4
130,747 + Psyr_0120 0.75 -0.3
130,748 - Psyr_0120 0.75 +0.8
130,748 - Psyr_0120 0.75 +0.1
130,748 - Psyr_0120 0.75 +1.7
130,761 + Psyr_0120 0.77 +0.4
130,761 + Psyr_0120 0.77 +0.1
130,762 - Psyr_0120 0.77 -0.5
130,762 - Psyr_0120 0.77 -0.9
130,762 - Psyr_0120 0.77 +1.3
130,762 - Psyr_0120 0.77 -1.1
130,762 - Psyr_0120 0.77 -0.4
130,762 - Psyr_0120 0.77 +0.0
130,762 - Psyr_0120 0.77 +1.1
130,762 - Psyr_0120 0.77 +0.3
130,762 - Psyr_0120 0.77 -0.6
130,762 - Psyr_0120 0.77 +0.5

Or see this region's nucleotide sequence