Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0040

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0039 and Psyr_0040 are separated by 212 nucleotidesPsyr_0040 and Psyr_0041 are separated by 118 nucleotidesPsyr_0041 and Psyr_0042 are separated by 0 nucleotidesPsyr_0042 and Psyr_0043 are separated by 33 nucleotides Psyr_0039: Psyr_0039 - luciferase, at 41,484 to 42,485 _0039 Psyr_0040: Psyr_0040 - OsmC-like protein, at 42,698 to 43,129 _0040 Psyr_0041: Psyr_0041 - Protein of unknown function DUF1161, at 43,248 to 43,481 _0041 Psyr_0042: Psyr_0042 - lipoprotein, putative, at 43,482 to 43,970 _0042 Psyr_0043: Psyr_0043 - conserved hypothetical protein, at 44,004 to 45,059 _0043 Position (kb) 42 43 44Strain fitness (log2 ratio) -2 -1 0 1 2 3at 41.756 kb on - strand, within Psyr_0039at 41.774 kb on - strand, within Psyr_0039at 41.774 kb on - strand, within Psyr_0039at 41.774 kb on - strand, within Psyr_0039at 41.827 kb on + strand, within Psyr_0039at 41.828 kb on - strand, within Psyr_0039at 41.828 kb on - strand, within Psyr_0039at 41.828 kb on - strand, within Psyr_0039at 41.869 kb on + strand, within Psyr_0039at 41.893 kb on + strand, within Psyr_0039at 41.894 kb on - strand, within Psyr_0039at 41.894 kb on - strand, within Psyr_0039at 42.049 kb on + strand, within Psyr_0039at 42.049 kb on + strand, within Psyr_0039at 42.049 kb on + strand, within Psyr_0039at 42.050 kb on - strand, within Psyr_0039at 42.659 kb on + strandat 42.660 kb on - strandat 42.798 kb on - strand, within Psyr_0040at 42.798 kb on - strand, within Psyr_0040at 42.935 kb on - strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.964 kb on - strand, within Psyr_0040at 42.964 kb on - strand, within Psyr_0040at 42.964 kb on - strand, within Psyr_0040at 43.114 kb on + strandat 43.114 kb on + strandat 43.114 kb on + strandat 43.114 kb on + strandat 43.115 kb on - strandat 43.115 kb on - strandat 43.115 kb on - strandat 43.115 kb on - strandat 43.115 kb on - strandat 43.115 kb on - strandat 43.169 kb on + strandat 43.169 kb on + strandat 43.170 kb on - strandat 43.170 kb on - strandat 43.178 kb on + strandat 43.178 kb on + strandat 43.178 kb on + strandat 43.178 kb on + strandat 43.178 kb on + strandat 43.178 kb on + strandat 43.178 kb on + strandat 43.179 kb on - strandat 43.179 kb on - strandat 43.179 kb on - strandat 43.180 kb on + strandat 43.180 kb on + strandat 43.180 kb on + strandat 43.180 kb on + strandat 43.181 kb on - strandat 43.181 kb on - strandat 43.181 kb on - strandat 43.230 kb on + strandat 43.230 kb on + strandat 43.260 kb on - strandat 43.374 kb on + strand, within Psyr_0041at 43.374 kb on + strand, within Psyr_0041at 43.375 kb on - strand, within Psyr_0041at 43.394 kb on + strand, within Psyr_0041at 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.462 kb on - strandat 43.462 kb on - strandat 43.462 kb on - strandat 43.462 kb on - strandat 43.462 kb on - strandat 43.462 kb on - strandat 43.544 kb on - strand, within Psyr_0042at 43.578 kb on + strand, within Psyr_0042at 43.591 kb on + strand, within Psyr_0042at 43.591 kb on + strand, within Psyr_0042at 43.591 kb on + strand, within Psyr_0042at 43.591 kb on + strand, within Psyr_0042at 43.591 kb on + strand, within Psyr_0042at 43.592 kb on - strand, within Psyr_0042at 43.592 kb on - strand, within Psyr_0042at 43.633 kb on + strand, within Psyr_0042at 43.634 kb on - strand, within Psyr_0042at 43.634 kb on - strand, within Psyr_0042at 43.651 kb on + strand, within Psyr_0042at 43.651 kb on + strand, within Psyr_0042at 43.693 kb on + strand, within Psyr_0042at 43.693 kb on + strand, within Psyr_0042at 43.693 kb on + strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.699 kb on + strand, within Psyr_0042at 43.699 kb on + strand, within Psyr_0042at 43.704 kb on + strand, within Psyr_0042at 43.704 kb on + strand, within Psyr_0042at 43.704 kb on + strand, within Psyr_0042at 43.704 kb on + strand, within Psyr_0042at 43.704 kb on + strand, within Psyr_0042at 43.705 kb on - strand, within Psyr_0042at 43.705 kb on - strand, within Psyr_0042at 43.705 kb on - strand, within Psyr_0042at 43.705 kb on - strand, within Psyr_0042at 43.705 kb on - strand, within Psyr_0042at 43.741 kb on + strand, within Psyr_0042at 43.741 kb on + strand, within Psyr_0042at 43.753 kb on + strand, within Psyr_0042at 43.753 kb on + strand, within Psyr_0042at 43.753 kb on + strand, within Psyr_0042at 43.753 kb on + strand, within Psyr_0042at 43.753 kb on + strand, within Psyr_0042at 43.754 kb on - strand, within Psyr_0042at 43.754 kb on - strand, within Psyr_0042at 43.878 kb on + strand, within Psyr_0042at 43.878 kb on + strand, within Psyr_0042at 43.878 kb on + strand, within Psyr_0042at 43.878 kb on + strand, within Psyr_0042at 43.879 kb on - strand, within Psyr_0042at 43.879 kb on - strand, within Psyr_0042at 43.879 kb on - strand, within Psyr_0042at 43.879 kb on - strand, within Psyr_0042at 43.879 kb on - strand, within Psyr_0042at 43.942 kb on + strandat 43.966 kb on - strandat 43.966 kb on - strandat 43.984 kb on + strandat 43.984 kb on + strandat 44.088 kb on + strandat 44.088 kb on + strandat 44.088 kb on + strandat 44.091 kb on + strandat 44.092 kb on - strandat 44.092 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
remove
41,756 - Psyr_0039 0.27 +0.7
41,774 - Psyr_0039 0.29 -0.1
41,774 - Psyr_0039 0.29 +0.3
41,774 - Psyr_0039 0.29 +0.4
41,827 + Psyr_0039 0.34 -0.5
41,828 - Psyr_0039 0.34 -1.3
41,828 - Psyr_0039 0.34 -0.9
41,828 - Psyr_0039 0.34 -2.4
41,869 + Psyr_0039 0.38 -1.7
41,893 + Psyr_0039 0.41 +0.1
41,894 - Psyr_0039 0.41 -0.6
41,894 - Psyr_0039 0.41 -1.1
42,049 + Psyr_0039 0.56 +0.1
42,049 + Psyr_0039 0.56 +0.5
42,049 + Psyr_0039 0.56 +0.4
42,050 - Psyr_0039 0.56 -0.2
42,659 + +1.7
42,660 - -0.8
42,798 - Psyr_0040 0.23 +0.5
42,798 - Psyr_0040 0.23 +0.9
42,935 - Psyr_0040 0.55 +0.2
42,963 + Psyr_0040 0.61 -0.6
42,963 + Psyr_0040 0.61 +1.3
42,963 + Psyr_0040 0.61 +2.7
42,963 + Psyr_0040 0.61 +0.4
42,963 + Psyr_0040 0.61 +0.9
42,963 + Psyr_0040 0.61 +0.5
42,963 + Psyr_0040 0.61 -0.5
42,964 - Psyr_0040 0.62 +2.7
42,964 - Psyr_0040 0.62 +0.1
42,964 - Psyr_0040 0.62 +1.1
43,114 + +0.6
43,114 + +0.2
43,114 + +0.2
43,114 + +1.1
43,115 - +0.7
43,115 - -1.1
43,115 - +0.7
43,115 - +0.0
43,115 - +0.4
43,115 - +1.1
43,169 + +0.7
43,169 + +0.8
43,170 - +0.2
43,170 - -0.2
43,178 + -1.0
43,178 + -0.8
43,178 + +0.2
43,178 + +0.4
43,178 + -0.4
43,178 + +1.2
43,178 + -1.0
43,179 - +1.0
43,179 - -0.1
43,179 - -0.2
43,180 + +0.0
43,180 + -0.6
43,180 + -0.8
43,180 + -0.6
43,181 - +0.9
43,181 - -1.0
43,181 - -0.2
43,230 + -0.3
43,230 + -0.0
43,260 - -0.4
43,374 + Psyr_0041 0.54 -0.2
43,374 + Psyr_0041 0.54 -0.7
43,375 - Psyr_0041 0.54 +0.1
43,394 + Psyr_0041 0.62 -0.7
43,461 + +1.2
43,461 + +1.1
43,461 + -0.5
43,461 + -1.2
43,461 + +0.6
43,461 + -0.6
43,461 + +0.1
43,461 + -0.2
43,461 + -1.2
43,461 + +0.5
43,462 - +0.4
43,462 - -0.0
43,462 - +0.4
43,462 - +2.7
43,462 - -0.5
43,462 - +0.2
43,544 - Psyr_0042 0.13 -0.0
43,578 + Psyr_0042 0.20 +0.0
43,591 + Psyr_0042 0.22 +0.9
43,591 + Psyr_0042 0.22 +0.2
43,591 + Psyr_0042 0.22 +1.0
43,591 + Psyr_0042 0.22 -0.4
43,591 + Psyr_0042 0.22 +1.0
43,592 - Psyr_0042 0.22 -0.1
43,592 - Psyr_0042 0.22 +0.6
43,633 + Psyr_0042 0.31 +0.8
43,634 - Psyr_0042 0.31 +0.2
43,634 - Psyr_0042 0.31 -0.8
43,651 + Psyr_0042 0.35 -0.2
43,651 + Psyr_0042 0.35 +1.3
43,693 + Psyr_0042 0.43 +0.7
43,693 + Psyr_0042 0.43 +0.8
43,693 + Psyr_0042 0.43 -0.0
43,694 - Psyr_0042 0.43 +1.0
43,694 - Psyr_0042 0.43 +1.1
43,694 - Psyr_0042 0.43 -0.8
43,694 - Psyr_0042 0.43 -1.8
43,694 - Psyr_0042 0.43 +0.1
43,694 - Psyr_0042 0.43 +0.7
43,694 - Psyr_0042 0.43 -1.6
43,699 + Psyr_0042 0.44 +1.2
43,699 + Psyr_0042 0.44 -0.7
43,704 + Psyr_0042 0.45 +1.0
43,704 + Psyr_0042 0.45 +0.5
43,704 + Psyr_0042 0.45 +0.7
43,704 + Psyr_0042 0.45 +0.3
43,704 + Psyr_0042 0.45 -1.3
43,705 - Psyr_0042 0.46 +1.5
43,705 - Psyr_0042 0.46 -0.0
43,705 - Psyr_0042 0.46 -1.1
43,705 - Psyr_0042 0.46 +0.1
43,705 - Psyr_0042 0.46 +0.6
43,741 + Psyr_0042 0.53 -0.5
43,741 + Psyr_0042 0.53 +0.0
43,753 + Psyr_0042 0.55 +2.9
43,753 + Psyr_0042 0.55 -0.3
43,753 + Psyr_0042 0.55 +0.4
43,753 + Psyr_0042 0.55 +0.3
43,753 + Psyr_0042 0.55 -0.1
43,754 - Psyr_0042 0.56 -0.1
43,754 - Psyr_0042 0.56 -0.1
43,878 + Psyr_0042 0.81 -0.5
43,878 + Psyr_0042 0.81 -0.8
43,878 + Psyr_0042 0.81 -0.2
43,878 + Psyr_0042 0.81 +1.3
43,879 - Psyr_0042 0.81 -0.6
43,879 - Psyr_0042 0.81 +1.4
43,879 - Psyr_0042 0.81 -0.5
43,879 - Psyr_0042 0.81 -0.9
43,879 - Psyr_0042 0.81 +0.4
43,942 + +1.4
43,966 - +0.2
43,966 - -0.9
43,984 + +0.1
43,984 + -0.1
44,088 + +1.1
44,088 + +0.2
44,088 + +0.3
44,091 + +0.9
44,092 - -0.2
44,092 - -0.2

Or see this region's nucleotide sequence