Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11475

Experiment: R2A with bismuth(III) chloride 0.03125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with bismuth(III) chloride 0.03125 mM
2,544,169	+		LRK54_RS11465	0.79	+2.0
2,544,220	+		LRK54_RS11465	0.84	+0.5
2,544,220	+		LRK54_RS11465	0.84	+0.4
2,544,220	+		LRK54_RS11465	0.84	-1.7
2,544,220	+		LRK54_RS11465	0.84	-0.2
2,544,221	-		LRK54_RS11465	0.84	+1.4
2,544,221	-		LRK54_RS11465	0.84	-0.2
2,544,221	-		LRK54_RS11465	0.84	+1.8
2,544,221	-		LRK54_RS11465	0.84	+0.3
2,544,221	-		LRK54_RS11465	0.84	-1.7
2,544,290	-				+1.1
2,544,290	-				-2.9
2,544,290	-				-0.8
2,544,437	+				-2.7
2,544,437	+				+0.8
2,544,438	-				+0.2
2,544,438	-				-3.1
2,544,438	-				+2.0
2,544,438	-				+3.4
2,544,438	-				+0.4
2,544,438	-				-1.6
2,544,473	+				+0.8
2,544,473	+				+0.9
2,544,473	+				-1.3
2,544,474	-				+3.5
2,544,474	-				+0.8
2,544,474	-				-2.3
2,544,474	-				-1.6
2,544,474	-				+1.7
2,544,474	-				+0.1
2,544,474	-				+0.3
2,544,495	-		LRK54_RS11470	0.10	+0.8
2,544,713	+		LRK54_RS11470	0.40	-0.8
2,544,713	+		LRK54_RS11470	0.40	+0.4
2,544,713	+		LRK54_RS11470	0.40	-1.6
2,544,713	+		LRK54_RS11470	0.40	+3.9
2,544,714	-		LRK54_RS11470	0.40	+2.4
2,544,714	-		LRK54_RS11470	0.40	+0.8
2,544,714	-		LRK54_RS11470	0.40	-2.3
2,544,714	-		LRK54_RS11470	0.40	-3.0
2,544,714	-		LRK54_RS11470	0.40	+0.4
2,544,750	-		LRK54_RS11470	0.45	-1.9
2,544,751	-		LRK54_RS11470	0.45	+0.4
2,544,933	-		LRK54_RS11470	0.70	-0.8
2,544,974	+		LRK54_RS11470	0.76	-1.7
2,544,974	+		LRK54_RS11470	0.76	-2.0
2,544,974	+		LRK54_RS11470	0.76	-0.9
2,544,974	+		LRK54_RS11470	0.76	+1.6
2,544,975	-		LRK54_RS11470	0.76	-0.7
2,544,975	-		LRK54_RS11470	0.76	+0.4
2,545,146	+				-1.3
2,545,146	+				-0.1
2,545,146	+				-1.5
2,545,146	+				+0.1
2,545,146	+				-2.3
2,545,146	+				-0.2
2,545,146	+				+1.9
2,545,146	+				-0.8
2,545,146	+				+1.5
2,545,147	-				-0.2
2,545,147	-				-0.4
2,545,147	-				-2.7
2,545,147	-				-1.2
2,545,147	-				-1.8
2,545,147	-				-1.4
2,545,147	-				+0.4
2,545,147	-				-1.1
2,545,147	-				+0.8
2,545,147	-				-2.8
2,545,192	+				+0.5
2,545,192	+				-1.1
2,545,193	-				+0.9
2,545,315	+				+1.6
2,545,316	-				-2.7
2,545,316	-				-2.5
2,545,430	-		LRK54_RS11475	0.17	-0.2
2,545,430	-		LRK54_RS11475	0.17	-2.4
2,545,485	-		LRK54_RS11475	0.20	+2.4
2,545,485	-		LRK54_RS11475	0.20	+0.1
2,545,543	+		LRK54_RS11475	0.23	+0.4
2,545,543	+		LRK54_RS11475	0.23	+1.6
2,545,543	+		LRK54_RS11475	0.23	+2.2
2,545,543	+		LRK54_RS11475	0.23	-0.6
2,545,544	-		LRK54_RS11475	0.24	+0.4
2,545,544	-		LRK54_RS11475	0.24	+0.4
2,545,544	-		LRK54_RS11475	0.24	-2.8
2,545,687	+		LRK54_RS11475	0.32	-1.4
2,545,687	+		LRK54_RS11475	0.32	+2.1
2,545,687	+		LRK54_RS11475	0.32	-1.4
2,545,687	+		LRK54_RS11475	0.32	-0.6
2,545,687	+		LRK54_RS11475	0.32	+0.4
2,545,687	+		LRK54_RS11475	0.32	+1.8
2,545,687	+		LRK54_RS11475	0.32	+0.2
2,545,687	+		LRK54_RS11475	0.32	-0.8
2,545,687	+		LRK54_RS11475	0.32	-0.2
2,545,687	+		LRK54_RS11475	0.32	+0.8
2,545,687	+		LRK54_RS11475	0.32	+0.1
2,545,687	+		LRK54_RS11475	0.32	+0.3
2,545,687	+		LRK54_RS11475	0.32	+0.1
2,545,687	+		LRK54_RS11475	0.32	+2.8
2,545,687	+		LRK54_RS11475	0.32	-2.3
2,545,687	+		LRK54_RS11475	0.32	-1.4
2,545,687	+		LRK54_RS11475	0.32	-0.4
2,545,688	-		LRK54_RS11475	0.32	+1.5
2,545,688	-		LRK54_RS11475	0.32	+1.1
2,545,688	-		LRK54_RS11475	0.32	-0.9
2,545,688	-		LRK54_RS11475	0.32	+0.1
2,545,688	-		LRK54_RS11475	0.32	-0.2
2,545,688	-		LRK54_RS11475	0.32	-0.2
2,545,688	-		LRK54_RS11475	0.32	+2.7
2,545,688	-		LRK54_RS11475	0.32	-1.9
2,545,688	-		LRK54_RS11475	0.32	+0.2
2,545,688	-		LRK54_RS11475	0.32	-0.6
2,545,688	-		LRK54_RS11475	0.32	-1.4
2,545,688	-		LRK54_RS11475	0.32	-0.8
2,545,688	-		LRK54_RS11475	0.32	+2.6
2,545,688	-		LRK54_RS11475	0.32	-0.5
2,545,688	-		LRK54_RS11475	0.32	-2.2
2,545,688	-		LRK54_RS11475	0.32	-1.1
2,545,762	+		LRK54_RS11475	0.36	-0.2
2,545,763	-		LRK54_RS11475	0.37	-1.4
2,546,161	+		LRK54_RS11475	0.60	-0.9
2,546,161	+		LRK54_RS11475	0.60	-2.7
2,546,161	+		LRK54_RS11475	0.60	-2.6
2,546,161	+		LRK54_RS11475	0.60	+0.1
2,546,161	+		LRK54_RS11475	0.60	+2.6
2,546,161	+		LRK54_RS11475	0.60	-2.7
2,546,161	+		LRK54_RS11475	0.60	-2.7
2,546,162	-		LRK54_RS11475	0.60	-2.5
2,546,162	-		LRK54_RS11475	0.60	+0.8
2,546,177	-		LRK54_RS11475	0.61	+0.9
2,546,177	-		LRK54_RS11475	0.61	-0.6
2,546,177	-		LRK54_RS11475	0.61	+1.1
2,546,182	+		LRK54_RS11475	0.61	+1.0
2,546,182	+		LRK54_RS11475	0.61	+0.4
2,546,183	-		LRK54_RS11475	0.62	-3.0
2,546,183	-		LRK54_RS11475	0.62	-1.8
2,546,183	-		LRK54_RS11475	0.62	+2.2
2,546,183	-		LRK54_RS11475	0.62	+0.7
2,546,183	-		LRK54_RS11475	0.62	-1.6
2,546,200	+		LRK54_RS11475	0.63	-1.7
2,546,377	+		LRK54_RS11475	0.73	+1.5
2,546,377	+		LRK54_RS11475	0.73	+0.9
2,546,377	+		LRK54_RS11475	0.73	-1.6
2,546,377	+		LRK54_RS11475	0.73	-0.9
2,546,377	+		LRK54_RS11475	0.73	-1.2
2,546,378	-		LRK54_RS11475	0.73	-1.2
2,546,378	-		LRK54_RS11475	0.73	+1.4
2,546,378	-		LRK54_RS11475	0.73	-2.8
2,546,378	-		LRK54_RS11475	0.73	-1.1
2,546,536	+		LRK54_RS11475	0.83	-3.3
2,546,537	-		LRK54_RS11475	0.83	-0.3
2,546,537	-		LRK54_RS11475	0.83	-2.4
2,546,537	-		LRK54_RS11475	0.83	-2.3
2,546,537	-		LRK54_RS11475	0.83	+0.7
2,546,537	-		LRK54_RS11475	0.83	-0.4
2,546,587	+		LRK54_RS11475	0.86	-0.2
2,546,709	+				+2.7
2,546,709	+				+0.9
2,546,709	+				+0.4
2,546,709	+				-0.3
2,546,709	+				-2.5
2,546,710	-				-1.1
2,546,710	-				+1.8
2,546,710	-				-0.8
2,546,710	-				-3.1
2,546,710	-				-0.2
2,546,710	-				+3.4
2,546,710	-				+0.2
2,546,710	-				-0.4
2,546,710	-				+1.2
2,546,790	+				-0.4
2,546,790	+				+0.6
2,546,790	+				-1.1
2,546,790	+				-0.6
2,546,790	+				+3.2
2,546,791	-				-0.9
2,546,791	-				-1.8
2,546,791	-				-1.7
2,546,791	-				-1.1
2,546,791	-				+0.8
2,546,791	-				-1.4
2,546,791	-				-1.9
2,546,791	-				-0.5
2,546,791	-				-1.5
2,546,791	-				+0.3
2,547,044	+		LRK54_RS11480	0.19	-1.3
2,547,044	+		LRK54_RS11480	0.19	-1.1
2,547,045	-		LRK54_RS11480	0.19	+0.3
2,547,045	-		LRK54_RS11480	0.19	+2.4
2,547,045	-		LRK54_RS11480	0.19	-2.1
2,547,045	-		LRK54_RS11480	0.19	-0.3
2,547,045	-		LRK54_RS11480	0.19	-1.8
2,547,114	-		LRK54_RS11480	0.25	-2.6
2,547,134	+		LRK54_RS11480	0.26	+0.1
2,547,135	-		LRK54_RS11480	0.26	+1.2
2,547,135	-		LRK54_RS11480	0.26	-1.1
2,547,135	-		LRK54_RS11480	0.26	+1.0
2,547,224	+		LRK54_RS11480	0.34	-0.6
2,547,224	+		LRK54_RS11480	0.34	-0.6
2,547,225	-		LRK54_RS11480	0.34	+0.8
2,547,611	+		LRK54_RS11480	0.66	+1.5
2,547,612	-		LRK54_RS11480	0.66	-2.3
2,547,612	-		LRK54_RS11480	0.66	-0.4
2,547,707	+		LRK54_RS11480	0.74	+0.7
2,547,707	+		LRK54_RS11480	0.74	-1.4
2,547,707	+		LRK54_RS11480	0.74	+1.2
2,547,707	+		LRK54_RS11480	0.74	-0.7
2,547,707	+		LRK54_RS11480	0.74	-0.3
2,547,707	+		LRK54_RS11480	0.74	+1.5
2,547,708	-		LRK54_RS11480	0.74	-1.9
2,547,708	-		LRK54_RS11480	0.74	+1.6
2,547,708	-		LRK54_RS11480	0.74	-0.7
2,547,708	-		LRK54_RS11480	0.74	+1.8
2,547,708	-		LRK54_RS11480	0.74	+2.9
2,547,708	-		LRK54_RS11480	0.74	+0.1
2,547,708	-		LRK54_RS11480	0.74	-1.9
2,547,737	+		LRK54_RS11480	0.76	+2.9
2,547,737	+		LRK54_RS11480	0.76	+0.1
2,547,738	-		LRK54_RS11480	0.76	+2.9
2,547,738	-		LRK54_RS11480	0.76	+0.7
2,547,771	-		LRK54_RS11480	0.79	-1.6