Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09565

Experiment: R2A with bismuth(III) chloride 0.03125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with bismuth(III) chloride 0.03125 mM
2,100,930	+		LRK54_RS09555	0.89	-2.5
2,100,930	+		LRK54_RS09555	0.89	+2.0
2,100,930	+		LRK54_RS09555	0.89	-1.1
2,100,931	-		LRK54_RS09555	0.89	-1.6
2,100,931	-		LRK54_RS09555	0.89	-2.1
2,101,105	+				+1.1
2,101,105	+				-0.7
2,101,105	+				+0.8
2,101,105	+				-1.2
2,101,106	-				+0.9
2,101,106	-				+2.0
2,101,106	-				-1.2
2,101,106	-				+3.1
2,101,106	-				-1.2
2,101,159	+				-1.5
2,101,159	+				-2.3
2,101,159	+				-0.8
2,101,159	+				+1.5
2,101,159	+				+0.9
2,101,159	+				-2.0
2,101,160	-				-2.1
2,101,160	-				-0.3
2,101,160	-				-1.9
2,101,160	-				+0.7
2,101,160	-				+0.9
2,101,160	-				-0.8
2,101,160	-				+0.4
2,101,160	-				-2.1
2,101,266	+		LRK54_RS09560	0.18	+0.5
2,101,266	+		LRK54_RS09560	0.18	-0.8
2,101,266	+		LRK54_RS09560	0.18	-1.3
2,101,266	+		LRK54_RS09560	0.18	-2.5
2,101,266	+		LRK54_RS09560	0.18	-3.3
2,101,266	+		LRK54_RS09560	0.18	-0.5
2,101,267	-		LRK54_RS09560	0.18	+0.9
2,101,267	-		LRK54_RS09560	0.18	-0.7
2,101,267	-		LRK54_RS09560	0.18	-0.5
2,101,267	-		LRK54_RS09560	0.18	-2.5
2,101,305	+		LRK54_RS09560	0.25	-1.3
2,101,306	-		LRK54_RS09560	0.25	-1.5
2,101,306	-		LRK54_RS09560	0.25	+3.5
2,101,306	-		LRK54_RS09560	0.25	-2.4
2,101,653	+		LRK54_RS09560	0.87	-2.1
2,101,653	+		LRK54_RS09560	0.87	+2.3
2,101,653	+		LRK54_RS09560	0.87	-0.1
2,101,653	+		LRK54_RS09560	0.87	+0.1
2,101,653	+		LRK54_RS09560	0.87	+0.5
2,101,654	-		LRK54_RS09560	0.87	+1.5
2,101,654	-		LRK54_RS09560	0.87	+0.1
2,101,654	-		LRK54_RS09560	0.87	+1.5
2,101,654	-		LRK54_RS09560	0.87	-2.9
2,101,654	-		LRK54_RS09560	0.87	+0.9
2,101,722	+				-1.2
2,101,722	+				-1.3
2,101,722	+				-0.1
2,101,722	+				+1.9
2,101,722	+				-1.6
2,101,723	-				-1.8
2,101,723	-				-0.5
2,101,745	+				-0.3
2,101,745	+				-1.0
2,101,745	+				-0.7
2,101,745	+				+2.3
2,101,745	+				+2.0
2,101,745	+				-2.5
2,101,745	+				+2.1
2,101,745	+				-2.6
2,101,745	+				-0.8
2,101,745	+				-1.4
2,101,745	+				+0.6
2,101,745	+				-0.8
2,101,746	-				+0.1
2,101,746	-				+0.5
2,101,746	-				-1.5
2,101,746	-				+1.5
2,101,746	-				-0.7
2,101,746	-				+0.1
2,101,746	-				-0.5
2,101,746	-				+0.5
2,101,746	-				+2.0
2,101,746	-				+2.1
2,101,746	-				-0.7
2,101,746	-				-2.6
2,101,861	+				-1.5
2,101,861	+				+0.5
2,101,861	+				+0.1
2,101,861	+				+0.5
2,101,861	+				-1.4
2,101,861	+				-2.3
2,101,862	-				+1.5
2,101,867	+				-2.6
2,101,897	+		LRK54_RS09565	0.13	+2.1
2,101,897	+		LRK54_RS09565	0.13	+0.1
2,101,897	+		LRK54_RS09565	0.13	-0.1
2,101,897	+		LRK54_RS09565	0.13	-1.0
2,101,897	+		LRK54_RS09565	0.13	+1.6
2,101,897	+		LRK54_RS09565	0.13	-2.1
2,101,897	+		LRK54_RS09565	0.13	-0.3
2,101,897	+		LRK54_RS09565	0.13	-1.8
2,101,897	+		LRK54_RS09565	0.13	-1.2
2,101,897	+		LRK54_RS09565	0.13	-0.9
2,101,897	+		LRK54_RS09565	0.13	+2.4
2,101,897	+		LRK54_RS09565	0.13	+1.4
2,101,897	+		LRK54_RS09565	0.13	-1.5
2,101,897	+		LRK54_RS09565	0.13	+2.2
2,101,898	-		LRK54_RS09565	0.13	+0.4
2,101,898	-		LRK54_RS09565	0.13	+0.2
2,101,898	-		LRK54_RS09565	0.13	+0.9
2,101,898	-		LRK54_RS09565	0.13	+0.3
2,101,898	-		LRK54_RS09565	0.13	+0.2
2,101,898	-		LRK54_RS09565	0.13	+0.6
2,101,898	-		LRK54_RS09565	0.13	+0.2
2,101,898	-		LRK54_RS09565	0.13	+2.0
2,101,901	-		LRK54_RS09565	0.14	-0.6
2,101,901	-		LRK54_RS09565	0.14	-2.4
2,101,954	+		LRK54_RS09565	0.32	+0.8
2,101,954	+		LRK54_RS09565	0.32	+3.6
2,101,954	+		LRK54_RS09565	0.32	-1.9
2,101,954	+		LRK54_RS09565	0.32	-1.1
2,101,954	+		LRK54_RS09565	0.32	-1.2
2,101,954	+		LRK54_RS09565	0.32	-1.5
2,101,954	+		LRK54_RS09565	0.32	+2.9
2,101,954	+		LRK54_RS09565	0.32	-0.2
2,101,954	+		LRK54_RS09565	0.32	-2.0
2,101,955	-		LRK54_RS09565	0.32	-0.3
2,101,955	-		LRK54_RS09565	0.32	-2.1
2,101,955	-		LRK54_RS09565	0.32	-1.3
2,101,955	-		LRK54_RS09565	0.32	-0.1
2,101,955	-		LRK54_RS09565	0.32	-1.4
2,101,955	-		LRK54_RS09565	0.32	-2.4
2,101,955	-		LRK54_RS09565	0.32	-2.8
2,101,955	-		LRK54_RS09565	0.32	-2.0
2,101,955	-		LRK54_RS09565	0.32	-2.3
2,101,955	-		LRK54_RS09565	0.32	-1.1
2,101,957	+		LRK54_RS09565	0.33	-0.5
2,101,957	+		LRK54_RS09565	0.33	-2.5
2,101,957	+		LRK54_RS09565	0.33	-0.7
2,101,957	+		LRK54_RS09565	0.33	+1.4
2,101,957	+		LRK54_RS09565	0.33	-1.4
2,101,958	-		LRK54_RS09565	0.33	-2.0
2,101,958	-		LRK54_RS09565	0.33	+1.5
2,101,958	-		LRK54_RS09565	0.33	-2.5
2,102,008	+		LRK54_RS09565	0.50	-2.7
2,102,008	+		LRK54_RS09565	0.50	-2.0
2,102,008	+		LRK54_RS09565	0.50	+0.5
2,102,008	+		LRK54_RS09565	0.50	-1.8
2,102,008	+		LRK54_RS09565	0.50	-1.1
2,102,008	+		LRK54_RS09565	0.50	+2.4
2,102,008	+		LRK54_RS09565	0.50	+0.5
2,102,008	+		LRK54_RS09565	0.50	-2.3
2,102,008	+		LRK54_RS09565	0.50	+0.7
2,102,008	+		LRK54_RS09565	0.50	-1.2
2,102,008	+		LRK54_RS09565	0.50	+0.3
2,102,008	+		LRK54_RS09565	0.50	+2.6
2,102,009	-		LRK54_RS09565	0.50	+3.6
2,102,009	-		LRK54_RS09565	0.50	+3.0
2,102,009	-		LRK54_RS09565	0.50	-0.5
2,102,009	-		LRK54_RS09565	0.50	+3.5
2,102,009	-		LRK54_RS09565	0.50	-0.2
2,102,009	-		LRK54_RS09565	0.50	-3.1
2,102,009	-		LRK54_RS09565	0.50	-0.0
2,102,112	+		LRK54_RS09565	0.84	+2.8
2,102,113	-		LRK54_RS09565	0.84	-0.7
2,102,159	-				-0.0
2,102,256	+				-3.4
2,102,256	+				+2.6
2,102,256	+				-2.6
2,102,256	+				+1.3
2,102,256	+				-2.1
2,102,256	+				+2.5
2,102,256	+				-2.7
2,102,256	+				-0.3
2,102,256	+				+0.2
2,102,256	+				+0.5
2,102,256	+				-2.8
2,102,256	+				+3.3
2,102,256	+				-2.3
2,102,256	+				-1.8
2,102,257	-				+2.0
2,102,257	-				-1.1
2,102,257	-				-2.1
2,102,257	-				-1.5
2,102,257	-				+1.4
2,102,257	-				+2.3
2,102,398	+		LRK54_RS09570	0.27	-0.8
2,102,398	+		LRK54_RS09570	0.27	+0.7
2,102,398	+		LRK54_RS09570	0.27	-1.6
2,102,398	+		LRK54_RS09570	0.27	-2.3
2,102,398	+		LRK54_RS09570	0.27	+1.7
2,102,399	-		LRK54_RS09570	0.28	+0.2
2,102,399	-		LRK54_RS09570	0.28	+0.8
2,102,399	-		LRK54_RS09570	0.28	-0.7
2,102,399	-		LRK54_RS09570	0.28	-1.3
2,102,399	-		LRK54_RS09570	0.28	-0.5
2,102,399	-		LRK54_RS09570	0.28	-0.5
2,102,412	+		LRK54_RS09570	0.31	-1.8
2,102,412	+		LRK54_RS09570	0.31	-0.5
2,102,412	+		LRK54_RS09570	0.31	-1.0
2,102,412	+		LRK54_RS09570	0.31	+1.2
2,102,412	+		LRK54_RS09570	0.31	-1.5
2,102,413	-		LRK54_RS09570	0.31	-3.6
2,102,413	-		LRK54_RS09570	0.31	-0.8
2,102,413	-		LRK54_RS09570	0.31	-1.1
2,102,413	-		LRK54_RS09570	0.31	-2.0
2,102,428	+		LRK54_RS09570	0.35	+2.5
2,102,428	+		LRK54_RS09570	0.35	+1.4
2,102,429	-		LRK54_RS09570	0.35	+3.6
2,102,515	-		LRK54_RS09570	0.55	-3.1
2,102,525	-		LRK54_RS09570	0.58	-2.5
2,102,568	+		LRK54_RS09570	0.68	-0.1
2,102,568	+		LRK54_RS09570	0.68	-1.7
2,102,568	+		LRK54_RS09570	0.68	-3.1
2,102,569	-		LRK54_RS09570	0.68	+0.3
2,102,569	-		LRK54_RS09570	0.68	-0.4
2,102,569	-		LRK54_RS09570	0.68	-2.0
2,102,569	-		LRK54_RS09570	0.68	-2.8
2,102,643	+		LRK54_RS09570	0.86	+0.3
2,102,643	+		LRK54_RS09570	0.86	+2.8
2,102,643	+		LRK54_RS09570	0.86	-0.1
2,102,643	+		LRK54_RS09570	0.86	+0.5
2,102,643	+		LRK54_RS09570	0.86	+1.9
2,102,644	-		LRK54_RS09570	0.86	-3.8
2,102,644	-		LRK54_RS09570	0.86	-0.5
2,102,644	-		LRK54_RS09570	0.86	+2.2
2,102,644	-		LRK54_RS09570	0.86	-1.4
2,102,644	-		LRK54_RS09570	0.86	+0.5
2,102,669	+				-0.3
2,102,670	-				-0.8
2,102,709	+				-0.2
2,102,710	-				+0.6
2,102,710	-				-2.5
2,102,710	-				-1.9
2,102,720	+				+0.7
2,102,720	+				-0.3
2,102,720	+				-2.3
2,102,720	+				-1.3
2,102,720	+				-2.2
2,102,720	+				+0.7
2,102,720	+				-0.1
2,102,720	+				-1.7
2,102,720	+				+4.4
2,102,720	+				-3.2
2,102,721	-				+2.2
2,102,721	-				+0.9
2,102,721	-				-0.6
2,102,721	-				-1.9
2,102,721	-				+3.9
2,102,721	-				-2.4
2,102,721	-				-0.3
2,102,721	-				-1.9
2,102,721	-				+1.3
2,102,721	-				+0.0
2,102,721	-				-0.3
2,102,721	-				-3.1
2,102,721	-				+0.5
2,102,721	-				-0.6
2,102,721	-				+0.5
2,102,721	-				-1.3
2,102,721	-				-0.3
2,102,721	-				+0.5
2,102,721	-				-2.5
2,102,768	-		LRK54_RS09575	0.10	-1.0
2,102,768	-		LRK54_RS09575	0.10	+2.6
2,102,840	+		LRK54_RS09575	0.20	-1.0
2,102,840	+		LRK54_RS09575	0.20	-0.8
2,102,841	-		LRK54_RS09575	0.20	+0.3
2,102,841	-		LRK54_RS09575	0.20	+0.9
2,102,841	-		LRK54_RS09575	0.20	-2.3
2,102,872	+		LRK54_RS09575	0.24	-2.1
2,102,872	+		LRK54_RS09575	0.24	-2.4
2,102,872	+		LRK54_RS09575	0.24	-0.7
2,102,872	+		LRK54_RS09575	0.24	-3.6
2,102,873	-		LRK54_RS09575	0.24	-3.2
2,102,873	-		LRK54_RS09575	0.24	-2.6
2,102,873	-		LRK54_RS09575	0.24	-0.3
2,102,873	-		LRK54_RS09575	0.24	+0.5
2,102,873	-		LRK54_RS09575	0.24	-1.3
2,102,873	-		LRK54_RS09575	0.24	-0.8
2,102,873	-		LRK54_RS09575	0.24	+0.9
2,102,902	+		LRK54_RS09575	0.28	+0.8
2,102,941	+		LRK54_RS09575	0.33	+3.2
2,102,941	+		LRK54_RS09575	0.33	+0.8
2,102,941	+		LRK54_RS09575	0.33	+1.4
2,102,941	+		LRK54_RS09575	0.33	+2.6
2,102,942	-		LRK54_RS09575	0.33	+0.2
2,102,942	-		LRK54_RS09575	0.33	-2.5
2,103,077	+		LRK54_RS09575	0.51	+0.7
2,103,078	-		LRK54_RS09575	0.51	-0.2
2,103,078	-		LRK54_RS09575	0.51	+0.7
2,103,155	-		LRK54_RS09575	0.61	-0.7