Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22070

Experiment: Maltitol 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS22065 and CA265_RS22070 are separated by 375 nucleotidesCA265_RS22070 and CA265_RS22075 are separated by 519 nucleotides CA265_RS22065: CA265_RS22065 - hypothetical protein, at 5,424,673 to 5,425,089 _RS22065 CA265_RS22070: CA265_RS22070 - hypothetical protein, at 5,425,465 to 5,425,662 _RS22070 CA265_RS22075: CA265_RS22075 - hypothetical protein, at 5,426,182 to 5,426,601 _RS22075 Position (kb) 5425 5426Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5424.499 kb on - strandat 5424.614 kb on + strandat 5424.614 kb on + strandat 5424.643 kb on + strandat 5424.644 kb on - strandat 5424.657 kb on + strandat 5424.666 kb on - strandat 5424.672 kb on + strandat 5424.673 kb on - strandat 5424.724 kb on - strand, within CA265_RS22065at 5424.767 kb on + strand, within CA265_RS22065at 5424.872 kb on + strand, within CA265_RS22065at 5424.873 kb on - strand, within CA265_RS22065at 5424.882 kb on - strand, within CA265_RS22065at 5424.895 kb on - strand, within CA265_RS22065at 5424.969 kb on - strand, within CA265_RS22065at 5424.983 kb on - strand, within CA265_RS22065at 5424.983 kb on - strand, within CA265_RS22065at 5424.983 kb on - strand, within CA265_RS22065at 5424.987 kb on - strand, within CA265_RS22065at 5424.997 kb on - strand, within CA265_RS22065at 5425.044 kb on - strand, within CA265_RS22065at 5425.050 kb on - strandat 5425.050 kb on - strandat 5425.234 kb on + strandat 5425.235 kb on - strandat 5425.249 kb on - strandat 5425.292 kb on + strandat 5425.299 kb on - strandat 5425.331 kb on + strandat 5425.332 kb on - strandat 5425.494 kb on + strand, within CA265_RS22070at 5425.496 kb on + strand, within CA265_RS22070at 5425.505 kb on + strand, within CA265_RS22070at 5425.546 kb on + strand, within CA265_RS22070at 5425.549 kb on - strand, within CA265_RS22070at 5425.560 kb on + strand, within CA265_RS22070at 5425.631 kb on + strand, within CA265_RS22070at 5425.631 kb on + strand, within CA265_RS22070at 5425.633 kb on + strand, within CA265_RS22070at 5425.633 kb on + strand, within CA265_RS22070at 5425.661 kb on - strandat 5425.666 kb on + strandat 5425.666 kb on + strandat 5425.691 kb on - strandat 5425.699 kb on + strandat 5425.764 kb on + strandat 5425.785 kb on - strandat 5425.785 kb on - strandat 5425.805 kb on - strandat 5425.891 kb on + strandat 5425.892 kb on - strandat 5425.997 kb on + strandat 5425.998 kb on - strandat 5426.012 kb on + strandat 5426.026 kb on + strandat 5426.032 kb on - strandat 5426.079 kb on + strandat 5426.080 kb on - strandat 5426.108 kb on + strandat 5426.126 kb on - strandat 5426.126 kb on - strandat 5426.126 kb on - strandat 5426.128 kb on - strandat 5426.162 kb on + strandat 5426.193 kb on - strandat 5426.193 kb on - strandat 5426.268 kb on + strand, within CA265_RS22075at 5426.280 kb on + strand, within CA265_RS22075at 5426.281 kb on - strand, within CA265_RS22075at 5426.325 kb on + strand, within CA265_RS22075at 5426.326 kb on - strand, within CA265_RS22075at 5426.326 kb on - strand, within CA265_RS22075at 5426.326 kb on - strand, within CA265_RS22075at 5426.326 kb on - strand, within CA265_RS22075at 5426.327 kb on + strand, within CA265_RS22075at 5426.416 kb on - strand, within CA265_RS22075at 5426.424 kb on + strand, within CA265_RS22075at 5426.460 kb on + strand, within CA265_RS22075at 5426.460 kb on + strand, within CA265_RS22075at 5426.461 kb on - strand, within CA265_RS22075at 5426.540 kb on + strandat 5426.608 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol 20mM (C)
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5,424,499 - -2.0
5,424,614 + +1.2
5,424,614 + +2.8
5,424,643 + +0.1
5,424,644 - +0.6
5,424,657 + -4.1
5,424,666 - +0.5
5,424,672 + -0.6
5,424,673 - -1.6
5,424,724 - CA265_RS22065 0.12 +0.4
5,424,767 + CA265_RS22065 0.23 -2.6
5,424,872 + CA265_RS22065 0.48 +0.7
5,424,873 - CA265_RS22065 0.48 -1.5
5,424,882 - CA265_RS22065 0.50 -1.0
5,424,895 - CA265_RS22065 0.53 -3.7
5,424,969 - CA265_RS22065 0.71 +0.6
5,424,983 - CA265_RS22065 0.74 -1.4
5,424,983 - CA265_RS22065 0.74 +0.8
5,424,983 - CA265_RS22065 0.74 +0.7
5,424,987 - CA265_RS22065 0.75 -1.0
5,424,997 - CA265_RS22065 0.78 -0.6
5,425,044 - CA265_RS22065 0.89 -0.8
5,425,050 - -0.7
5,425,050 - +1.3
5,425,234 + +0.6
5,425,235 - -2.0
5,425,249 - -0.1
5,425,292 + -0.1
5,425,299 - +0.3
5,425,331 + +0.6
5,425,332 - -0.8
5,425,494 + CA265_RS22070 0.15 +1.4
5,425,496 + CA265_RS22070 0.16 +0.4
5,425,505 + CA265_RS22070 0.20 -0.1
5,425,546 + CA265_RS22070 0.41 -2.9
5,425,549 - CA265_RS22070 0.42 -0.7
5,425,560 + CA265_RS22070 0.48 +0.0
5,425,631 + CA265_RS22070 0.84 +0.6
5,425,631 + CA265_RS22070 0.84 -1.0
5,425,633 + CA265_RS22070 0.85 -2.5
5,425,633 + CA265_RS22070 0.85 -0.6
5,425,661 - +0.4
5,425,666 + +0.3
5,425,666 + -2.2
5,425,691 - -0.3
5,425,699 + -0.5
5,425,764 + -1.9
5,425,785 - +0.4
5,425,785 - -2.0
5,425,805 - +0.3
5,425,891 + -4.3
5,425,892 - +0.4
5,425,997 + +0.4
5,425,998 - -0.2
5,426,012 + +0.1
5,426,026 + +0.6
5,426,032 - -0.4
5,426,079 + +0.5
5,426,080 - +1.0
5,426,108 + +0.1
5,426,126 - -0.9
5,426,126 - +0.8
5,426,126 - -0.9
5,426,128 - +2.1
5,426,162 + +0.1
5,426,193 - +0.4
5,426,193 - +0.3
5,426,268 + CA265_RS22075 0.20 +0.5
5,426,280 + CA265_RS22075 0.23 -1.6
5,426,281 - CA265_RS22075 0.24 -0.5
5,426,325 + CA265_RS22075 0.34 -1.4
5,426,326 - CA265_RS22075 0.34 -0.6
5,426,326 - CA265_RS22075 0.34 -0.0
5,426,326 - CA265_RS22075 0.34 -2.1
5,426,326 - CA265_RS22075 0.34 -0.1
5,426,327 + CA265_RS22075 0.35 +1.1
5,426,416 - CA265_RS22075 0.56 +0.6
5,426,424 + CA265_RS22075 0.58 +1.6
5,426,460 + CA265_RS22075 0.66 -1.6
5,426,460 + CA265_RS22075 0.66 -0.9
5,426,461 - CA265_RS22075 0.66 -0.7
5,426,540 + -0.9
5,426,608 + -0.3

Or see this region's nucleotide sequence