Experiment: Maltitol 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22065 and CA265_RS22070 are separated by 375 nucleotides CA265_RS22070 and CA265_RS22075 are separated by 519 nucleotides
CA265_RS22065: CA265_RS22065 - hypothetical protein, at 5,424,673 to 5,425,089
_RS22065
CA265_RS22070: CA265_RS22070 - hypothetical protein, at 5,425,465 to 5,425,662
_RS22070
CA265_RS22075: CA265_RS22075 - hypothetical protein, at 5,426,182 to 5,426,601
_RS22075
Position (kb)
5425
5426 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 5424.499 kb on - strand at 5424.614 kb on + strand at 5424.614 kb on + strand at 5424.643 kb on + strand at 5424.644 kb on - strand at 5424.657 kb on + strand at 5424.666 kb on - strand at 5424.672 kb on + strand at 5424.673 kb on - strand at 5424.724 kb on - strand, within CA265_RS22065 at 5424.767 kb on + strand, within CA265_RS22065 at 5424.872 kb on + strand, within CA265_RS22065 at 5424.873 kb on - strand, within CA265_RS22065 at 5424.882 kb on - strand, within CA265_RS22065 at 5424.895 kb on - strand, within CA265_RS22065 at 5424.969 kb on - strand, within CA265_RS22065 at 5424.983 kb on - strand, within CA265_RS22065 at 5424.983 kb on - strand, within CA265_RS22065 at 5424.983 kb on - strand, within CA265_RS22065 at 5424.987 kb on - strand, within CA265_RS22065 at 5424.997 kb on - strand, within CA265_RS22065 at 5425.044 kb on - strand, within CA265_RS22065 at 5425.050 kb on - strand at 5425.050 kb on - strand at 5425.234 kb on + strand at 5425.235 kb on - strand at 5425.249 kb on - strand at 5425.292 kb on + strand at 5425.299 kb on - strand at 5425.331 kb on + strand at 5425.332 kb on - strand at 5425.494 kb on + strand, within CA265_RS22070 at 5425.496 kb on + strand, within CA265_RS22070 at 5425.505 kb on + strand, within CA265_RS22070 at 5425.546 kb on + strand, within CA265_RS22070 at 5425.549 kb on - strand, within CA265_RS22070 at 5425.560 kb on + strand, within CA265_RS22070 at 5425.631 kb on + strand, within CA265_RS22070 at 5425.631 kb on + strand, within CA265_RS22070 at 5425.633 kb on + strand, within CA265_RS22070 at 5425.633 kb on + strand, within CA265_RS22070 at 5425.661 kb on - strand at 5425.666 kb on + strand at 5425.666 kb on + strand at 5425.691 kb on - strand at 5425.699 kb on + strand at 5425.764 kb on + strand at 5425.785 kb on - strand at 5425.785 kb on - strand at 5425.805 kb on - strand at 5425.891 kb on + strand at 5425.892 kb on - strand at 5425.997 kb on + strand at 5425.998 kb on - strand at 5426.012 kb on + strand at 5426.026 kb on + strand at 5426.032 kb on - strand at 5426.079 kb on + strand at 5426.080 kb on - strand at 5426.108 kb on + strand at 5426.126 kb on - strand at 5426.126 kb on - strand at 5426.126 kb on - strand at 5426.128 kb on - strand at 5426.162 kb on + strand at 5426.193 kb on - strand at 5426.193 kb on - strand at 5426.268 kb on + strand, within CA265_RS22075 at 5426.280 kb on + strand, within CA265_RS22075 at 5426.281 kb on - strand, within CA265_RS22075 at 5426.325 kb on + strand, within CA265_RS22075 at 5426.326 kb on - strand, within CA265_RS22075 at 5426.326 kb on - strand, within CA265_RS22075 at 5426.326 kb on - strand, within CA265_RS22075 at 5426.326 kb on - strand, within CA265_RS22075 at 5426.327 kb on + strand, within CA265_RS22075 at 5426.416 kb on - strand, within CA265_RS22075 at 5426.424 kb on + strand, within CA265_RS22075 at 5426.460 kb on + strand, within CA265_RS22075 at 5426.460 kb on + strand, within CA265_RS22075 at 5426.461 kb on - strand, within CA265_RS22075 at 5426.540 kb on + strand at 5426.608 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Maltitol 20mM (C) remove 5,424,499 - -2.0 5,424,614 + +1.2 5,424,614 + +2.8 5,424,643 + +0.1 5,424,644 - +0.6 5,424,657 + -4.1 5,424,666 - +0.5 5,424,672 + -0.6 5,424,673 - -1.6 5,424,724 - CA265_RS22065 0.12 +0.4 5,424,767 + CA265_RS22065 0.23 -2.6 5,424,872 + CA265_RS22065 0.48 +0.7 5,424,873 - CA265_RS22065 0.48 -1.5 5,424,882 - CA265_RS22065 0.50 -1.0 5,424,895 - CA265_RS22065 0.53 -3.7 5,424,969 - CA265_RS22065 0.71 +0.6 5,424,983 - CA265_RS22065 0.74 -1.4 5,424,983 - CA265_RS22065 0.74 +0.8 5,424,983 - CA265_RS22065 0.74 +0.7 5,424,987 - CA265_RS22065 0.75 -1.0 5,424,997 - CA265_RS22065 0.78 -0.6 5,425,044 - CA265_RS22065 0.89 -0.8 5,425,050 - -0.7 5,425,050 - +1.3 5,425,234 + +0.6 5,425,235 - -2.0 5,425,249 - -0.1 5,425,292 + -0.1 5,425,299 - +0.3 5,425,331 + +0.6 5,425,332 - -0.8 5,425,494 + CA265_RS22070 0.15 +1.4 5,425,496 + CA265_RS22070 0.16 +0.4 5,425,505 + CA265_RS22070 0.20 -0.1 5,425,546 + CA265_RS22070 0.41 -2.9 5,425,549 - CA265_RS22070 0.42 -0.7 5,425,560 + CA265_RS22070 0.48 +0.0 5,425,631 + CA265_RS22070 0.84 +0.6 5,425,631 + CA265_RS22070 0.84 -1.0 5,425,633 + CA265_RS22070 0.85 -2.5 5,425,633 + CA265_RS22070 0.85 -0.6 5,425,661 - +0.4 5,425,666 + +0.3 5,425,666 + -2.2 5,425,691 - -0.3 5,425,699 + -0.5 5,425,764 + -1.9 5,425,785 - +0.4 5,425,785 - -2.0 5,425,805 - +0.3 5,425,891 + -4.3 5,425,892 - +0.4 5,425,997 + +0.4 5,425,998 - -0.2 5,426,012 + +0.1 5,426,026 + +0.6 5,426,032 - -0.4 5,426,079 + +0.5 5,426,080 - +1.0 5,426,108 + +0.1 5,426,126 - -0.9 5,426,126 - +0.8 5,426,126 - -0.9 5,426,128 - +2.1 5,426,162 + +0.1 5,426,193 - +0.4 5,426,193 - +0.3 5,426,268 + CA265_RS22075 0.20 +0.5 5,426,280 + CA265_RS22075 0.23 -1.6 5,426,281 - CA265_RS22075 0.24 -0.5 5,426,325 + CA265_RS22075 0.34 -1.4 5,426,326 - CA265_RS22075 0.34 -0.6 5,426,326 - CA265_RS22075 0.34 -0.0 5,426,326 - CA265_RS22075 0.34 -2.1 5,426,326 - CA265_RS22075 0.34 -0.1 5,426,327 + CA265_RS22075 0.35 +1.1 5,426,416 - CA265_RS22075 0.56 +0.6 5,426,424 + CA265_RS22075 0.58 +1.6 5,426,460 + CA265_RS22075 0.66 -1.6 5,426,460 + CA265_RS22075 0.66 -0.9 5,426,461 - CA265_RS22075 0.66 -0.7 5,426,540 + -0.9 5,426,608 + -0.3
Or see this region's nucleotide sequence