Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21375

Experiment: Maltitol 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21370 and CA265_RS21375 are separated by 407 nucleotidesCA265_RS21375 and CA265_RS21380 are separated by 285 nucleotides CA265_RS21370: CA265_RS21370 - peroxiredoxin, at 5,270,272 to 5,270,904 _RS21370 CA265_RS21375: CA265_RS21375 - S9 family peptidase, at 5,271,312 to 5,273,591 _RS21375 CA265_RS21380: CA265_RS21380 - hypothetical protein, at 5,273,877 to 5,275,064 _RS21380 Position (kb) 5271 5272 5273 5274Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 5270.402 kb on + strand, within CA265_RS21370at 5270.572 kb on + strand, within CA265_RS21370at 5270.587 kb on - strand, within CA265_RS21370at 5270.604 kb on - strand, within CA265_RS21370at 5270.607 kb on + strand, within CA265_RS21370at 5270.607 kb on + strand, within CA265_RS21370at 5270.640 kb on + strand, within CA265_RS21370at 5270.641 kb on - strand, within CA265_RS21370at 5270.645 kb on - strand, within CA265_RS21370at 5270.671 kb on - strand, within CA265_RS21370at 5270.671 kb on - strand, within CA265_RS21370at 5270.697 kb on + strand, within CA265_RS21370at 5270.789 kb on - strand, within CA265_RS21370at 5270.825 kb on - strand, within CA265_RS21370at 5270.938 kb on - strandat 5270.943 kb on + strandat 5270.986 kb on + strandat 5271.005 kb on - strandat 5271.082 kb on + strandat 5271.083 kb on - strandat 5271.146 kb on - strandat 5271.177 kb on + strandat 5271.181 kb on - strandat 5271.181 kb on - strandat 5271.182 kb on + strandat 5271.267 kb on + strandat 5271.267 kb on + strandat 5271.341 kb on + strandat 5271.354 kb on - strandat 5271.435 kb on + strandat 5271.436 kb on - strandat 5271.444 kb on - strandat 5271.468 kb on - strandat 5271.511 kb on - strandat 5271.562 kb on + strand, within CA265_RS21375at 5271.591 kb on + strand, within CA265_RS21375at 5271.592 kb on - strand, within CA265_RS21375at 5271.605 kb on + strand, within CA265_RS21375at 5271.606 kb on - strand, within CA265_RS21375at 5271.618 kb on - strand, within CA265_RS21375at 5271.702 kb on - strand, within CA265_RS21375at 5271.713 kb on - strand, within CA265_RS21375at 5271.746 kb on + strand, within CA265_RS21375at 5271.783 kb on + strand, within CA265_RS21375at 5271.784 kb on - strand, within CA265_RS21375at 5271.903 kb on + strand, within CA265_RS21375at 5271.932 kb on - strand, within CA265_RS21375at 5272.013 kb on + strand, within CA265_RS21375at 5272.014 kb on - strand, within CA265_RS21375at 5272.023 kb on - strand, within CA265_RS21375at 5272.116 kb on - strand, within CA265_RS21375at 5272.152 kb on - strand, within CA265_RS21375at 5272.165 kb on + strand, within CA265_RS21375at 5272.166 kb on - strand, within CA265_RS21375at 5272.260 kb on - strand, within CA265_RS21375at 5272.285 kb on - strand, within CA265_RS21375at 5272.346 kb on + strand, within CA265_RS21375at 5272.347 kb on - strand, within CA265_RS21375at 5272.359 kb on - strand, within CA265_RS21375at 5272.378 kb on - strand, within CA265_RS21375at 5272.397 kb on + strand, within CA265_RS21375at 5272.436 kb on - strand, within CA265_RS21375at 5272.436 kb on - strand, within CA265_RS21375at 5272.454 kb on + strand, within CA265_RS21375at 5272.485 kb on - strand, within CA265_RS21375at 5272.485 kb on - strand, within CA265_RS21375at 5272.593 kb on + strand, within CA265_RS21375at 5272.593 kb on + strand, within CA265_RS21375at 5272.593 kb on + strand, within CA265_RS21375at 5272.593 kb on + strand, within CA265_RS21375at 5272.594 kb on - strand, within CA265_RS21375at 5272.594 kb on - strand, within CA265_RS21375at 5272.594 kb on - strand, within CA265_RS21375at 5272.650 kb on - strand, within CA265_RS21375at 5272.793 kb on + strand, within CA265_RS21375at 5272.818 kb on + strand, within CA265_RS21375at 5272.819 kb on + strand, within CA265_RS21375at 5272.820 kb on - strand, within CA265_RS21375at 5272.823 kb on + strand, within CA265_RS21375at 5272.885 kb on + strand, within CA265_RS21375at 5272.899 kb on - strand, within CA265_RS21375at 5272.952 kb on + strand, within CA265_RS21375at 5272.953 kb on - strand, within CA265_RS21375at 5272.953 kb on - strand, within CA265_RS21375at 5272.954 kb on + strand, within CA265_RS21375at 5272.954 kb on + strand, within CA265_RS21375at 5272.954 kb on + strand, within CA265_RS21375at 5272.980 kb on - strand, within CA265_RS21375at 5272.986 kb on + strand, within CA265_RS21375at 5273.015 kb on - strand, within CA265_RS21375at 5273.108 kb on + strand, within CA265_RS21375at 5273.205 kb on - strand, within CA265_RS21375at 5273.279 kb on + strand, within CA265_RS21375at 5273.280 kb on - strand, within CA265_RS21375at 5273.365 kb on - strandat 5273.365 kb on - strandat 5273.368 kb on + strandat 5273.411 kb on + strandat 5273.414 kb on + strandat 5273.414 kb on + strandat 5273.417 kb on - strandat 5273.417 kb on - strandat 5273.427 kb on + strandat 5273.517 kb on - strandat 5273.535 kb on - strandat 5273.553 kb on - strandat 5273.573 kb on + strandat 5273.626 kb on - strandat 5273.634 kb on + strandat 5273.686 kb on + strandat 5273.721 kb on - strandat 5273.786 kb on + strandat 5273.786 kb on + strandat 5273.794 kb on - strandat 5273.863 kb on + strandat 5273.864 kb on - strandat 5273.864 kb on - strandat 5273.864 kb on - strandat 5273.867 kb on + strandat 5273.905 kb on - strandat 5273.905 kb on - strandat 5273.946 kb on + strandat 5273.978 kb on + strandat 5274.068 kb on - strand, within CA265_RS21380at 5274.086 kb on + strand, within CA265_RS21380at 5274.108 kb on - strand, within CA265_RS21380at 5274.178 kb on + strand, within CA265_RS21380at 5274.179 kb on - strand, within CA265_RS21380at 5274.222 kb on + strand, within CA265_RS21380at 5274.247 kb on - strand, within CA265_RS21380at 5274.443 kb on + strand, within CA265_RS21380at 5274.445 kb on + strand, within CA265_RS21380at 5274.445 kb on + strand, within CA265_RS21380at 5274.446 kb on - strand, within CA265_RS21380at 5274.446 kb on - strand, within CA265_RS21380at 5274.447 kb on + strand, within CA265_RS21380at 5274.479 kb on + strand, within CA265_RS21380at 5274.479 kb on + strand, within CA265_RS21380at 5274.482 kb on - strand, within CA265_RS21380at 5274.535 kb on + strand, within CA265_RS21380at 5274.536 kb on - strand, within CA265_RS21380

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol 20mM (C)
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5,270,402 + CA265_RS21370 0.21 +0.9
5,270,572 + CA265_RS21370 0.47 -0.1
5,270,587 - CA265_RS21370 0.50 +0.0
5,270,604 - CA265_RS21370 0.52 -0.1
5,270,607 + CA265_RS21370 0.53 +0.5
5,270,607 + CA265_RS21370 0.53 +0.3
5,270,640 + CA265_RS21370 0.58 -0.2
5,270,641 - CA265_RS21370 0.58 -0.6
5,270,645 - CA265_RS21370 0.59 +0.5
5,270,671 - CA265_RS21370 0.63 +0.1
5,270,671 - CA265_RS21370 0.63 +0.7
5,270,697 + CA265_RS21370 0.67 +0.5
5,270,789 - CA265_RS21370 0.82 -0.3
5,270,825 - CA265_RS21370 0.87 -0.0
5,270,938 - +0.8
5,270,943 + +2.0
5,270,986 + -1.8
5,271,005 - +1.4
5,271,082 + -0.8
5,271,083 - +0.5
5,271,146 - -0.2
5,271,177 + -1.6
5,271,181 - -1.3
5,271,181 - -0.1
5,271,182 + -1.4
5,271,267 + -0.6
5,271,267 + -0.1
5,271,341 + +0.3
5,271,354 - -1.3
5,271,435 + +0.8
5,271,436 - +0.8
5,271,444 - -1.3
5,271,468 - -0.2
5,271,511 - -2.3
5,271,562 + CA265_RS21375 0.11 +2.3
5,271,591 + CA265_RS21375 0.12 -0.3
5,271,592 - CA265_RS21375 0.12 +2.1
5,271,605 + CA265_RS21375 0.13 +1.3
5,271,606 - CA265_RS21375 0.13 -2.2
5,271,618 - CA265_RS21375 0.13 +0.3
5,271,702 - CA265_RS21375 0.17 +0.2
5,271,713 - CA265_RS21375 0.18 -0.1
5,271,746 + CA265_RS21375 0.19 -0.1
5,271,783 + CA265_RS21375 0.21 -0.7
5,271,784 - CA265_RS21375 0.21 +0.4
5,271,903 + CA265_RS21375 0.26 +0.3
5,271,932 - CA265_RS21375 0.27 -1.4
5,272,013 + CA265_RS21375 0.31 +1.8
5,272,014 - CA265_RS21375 0.31 +0.9
5,272,023 - CA265_RS21375 0.31 +0.1
5,272,116 - CA265_RS21375 0.35 -0.2
5,272,152 - CA265_RS21375 0.37 -3.3
5,272,165 + CA265_RS21375 0.37 -0.4
5,272,166 - CA265_RS21375 0.37 +0.7
5,272,260 - CA265_RS21375 0.42 +0.3
5,272,285 - CA265_RS21375 0.43 -1.9
5,272,346 + CA265_RS21375 0.45 -0.9
5,272,347 - CA265_RS21375 0.45 +0.1
5,272,359 - CA265_RS21375 0.46 -3.3
5,272,378 - CA265_RS21375 0.47 -1.5
5,272,397 + CA265_RS21375 0.48 -0.3
5,272,436 - CA265_RS21375 0.49 +0.3
5,272,436 - CA265_RS21375 0.49 +0.5
5,272,454 + CA265_RS21375 0.50 -0.2
5,272,485 - CA265_RS21375 0.51 +0.5
5,272,485 - CA265_RS21375 0.51 +0.4
5,272,593 + CA265_RS21375 0.56 -0.8
5,272,593 + CA265_RS21375 0.56 +0.2
5,272,593 + CA265_RS21375 0.56 -0.3
5,272,593 + CA265_RS21375 0.56 -0.9
5,272,594 - CA265_RS21375 0.56 +0.8
5,272,594 - CA265_RS21375 0.56 +0.3
5,272,594 - CA265_RS21375 0.56 -0.5
5,272,650 - CA265_RS21375 0.59 -0.4
5,272,793 + CA265_RS21375 0.65 -0.7
5,272,818 + CA265_RS21375 0.66 -0.0
5,272,819 + CA265_RS21375 0.66 +0.1
5,272,820 - CA265_RS21375 0.66 -0.6
5,272,823 + CA265_RS21375 0.66 +1.0
5,272,885 + CA265_RS21375 0.69 +1.6
5,272,899 - CA265_RS21375 0.70 +1.5
5,272,952 + CA265_RS21375 0.72 -0.5
5,272,953 - CA265_RS21375 0.72 +0.8
5,272,953 - CA265_RS21375 0.72 +0.3
5,272,954 + CA265_RS21375 0.72 +0.8
5,272,954 + CA265_RS21375 0.72 -0.4
5,272,954 + CA265_RS21375 0.72 +1.2
5,272,980 - CA265_RS21375 0.73 -0.1
5,272,986 + CA265_RS21375 0.73 -0.5
5,273,015 - CA265_RS21375 0.75 -2.5
5,273,108 + CA265_RS21375 0.79 -1.4
5,273,205 - CA265_RS21375 0.83 -3.0
5,273,279 + CA265_RS21375 0.86 +1.3
5,273,280 - CA265_RS21375 0.86 -0.0
5,273,365 - -0.1
5,273,365 - +0.9
5,273,368 + -0.4
5,273,411 + -0.6
5,273,414 + -0.4
5,273,414 + +0.2
5,273,417 - +2.0
5,273,417 - +0.0
5,273,427 + -0.3
5,273,517 - +1.9
5,273,535 - +0.3
5,273,553 - +0.8
5,273,573 + +0.6
5,273,626 - -0.2
5,273,634 + +1.9
5,273,686 + -0.3
5,273,721 - +2.0
5,273,786 + -1.2
5,273,786 + -0.0
5,273,794 - -1.3
5,273,863 + +1.1
5,273,864 - +0.8
5,273,864 - -2.0
5,273,864 - -0.7
5,273,867 + +0.8
5,273,905 - -0.1
5,273,905 - -0.6
5,273,946 + -0.5
5,273,978 + +0.4
5,274,068 - CA265_RS21380 0.16 +1.8
5,274,086 + CA265_RS21380 0.18 +1.4
5,274,108 - CA265_RS21380 0.19 +0.3
5,274,178 + CA265_RS21380 0.25 +0.2
5,274,179 - CA265_RS21380 0.25 -2.3
5,274,222 + CA265_RS21380 0.29 -0.4
5,274,247 - CA265_RS21380 0.31 -0.2
5,274,443 + CA265_RS21380 0.48 +0.1
5,274,445 + CA265_RS21380 0.48 +0.7
5,274,445 + CA265_RS21380 0.48 +5.1
5,274,446 - CA265_RS21380 0.48 +0.1
5,274,446 - CA265_RS21380 0.48 -0.8
5,274,447 + CA265_RS21380 0.48 -0.6
5,274,479 + CA265_RS21380 0.51 +1.7
5,274,479 + CA265_RS21380 0.51 +0.0
5,274,482 - CA265_RS21380 0.51 +0.7
5,274,535 + CA265_RS21380 0.55 -0.9
5,274,536 - CA265_RS21380 0.55 +0.9

Or see this region's nucleotide sequence