Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15745

Experiment: Maltitol 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS15735 and CA265_RS15740 are separated by 156 nucleotidesCA265_RS15740 and CA265_RS15745 are separated by 182 nucleotidesCA265_RS15745 and CA265_RS15750 are separated by 16 nucleotidesCA265_RS15750 and CA265_RS15755 are separated by 190 nucleotides CA265_RS15735: CA265_RS15735 - GTPase Obg, at 3,965,437 to 3,966,432 _RS15735 CA265_RS15740: CA265_RS15740 - adenylate kinase, at 3,966,589 to 3,967,164 _RS15740 CA265_RS15745: CA265_RS15745 - hypothetical protein, at 3,967,347 to 3,967,541 _RS15745 CA265_RS15750: CA265_RS15750 - tRNA-Arg, at 3,967,558 to 3,967,631 _RS15750 CA265_RS15755: CA265_RS15755 - hypothetical protein, at 3,967,822 to 3,968,931 _RS15755 Position (kb) 3967 3968Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3966.515 kb on - strandat 3966.556 kb on - strandat 3966.577 kb on - strandat 3966.577 kb on - strandat 3966.598 kb on - strandat 3966.611 kb on - strandat 3967.287 kb on - strandat 3967.355 kb on + strandat 3967.718 kb on + strandat 3967.785 kb on + strandat 3967.872 kb on - strandat 3967.872 kb on - strandat 3967.886 kb on + strandat 3967.941 kb on + strand, within CA265_RS15755at 3967.942 kb on - strand, within CA265_RS15755at 3967.951 kb on - strandat 3967.961 kb on - strand, within CA265_RS15755at 3967.964 kb on + strand, within CA265_RS15755at 3967.969 kb on + strand, within CA265_RS15755at 3967.969 kb on + strand, within CA265_RS15755at 3968.082 kb on - strand, within CA265_RS15755at 3968.154 kb on - strand, within CA265_RS15755at 3968.163 kb on + strand, within CA265_RS15755at 3968.202 kb on - strand, within CA265_RS15755at 3968.236 kb on + strand, within CA265_RS15755at 3968.248 kb on + strand, within CA265_RS15755at 3968.253 kb on - strand, within CA265_RS15755at 3968.350 kb on + strand, within CA265_RS15755at 3968.370 kb on + strand, within CA265_RS15755at 3968.424 kb on + strand, within CA265_RS15755at 3968.425 kb on - strand, within CA265_RS15755at 3968.461 kb on + strand, within CA265_RS15755at 3968.470 kb on - strand, within CA265_RS15755at 3968.485 kb on - strand, within CA265_RS15755

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol 20mM (C)
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3,966,515 - +0.7
3,966,556 - +0.2
3,966,577 - -0.4
3,966,577 - -0.6
3,966,598 - +1.3
3,966,611 - +1.4
3,967,287 - +0.2
3,967,355 + +0.3
3,967,718 + +0.1
3,967,785 + +0.1
3,967,872 - -0.3
3,967,872 - +0.5
3,967,886 + -0.4
3,967,941 + CA265_RS15755 0.11 -2.2
3,967,942 - CA265_RS15755 0.11 +0.5
3,967,951 - -0.9
3,967,961 - CA265_RS15755 0.13 +0.4
3,967,964 + CA265_RS15755 0.13 -0.4
3,967,969 + CA265_RS15755 0.13 +0.7
3,967,969 + CA265_RS15755 0.13 -0.4
3,968,082 - CA265_RS15755 0.23 -0.2
3,968,154 - CA265_RS15755 0.30 +3.0
3,968,163 + CA265_RS15755 0.31 -0.3
3,968,202 - CA265_RS15755 0.34 -1.8
3,968,236 + CA265_RS15755 0.37 -0.8
3,968,248 + CA265_RS15755 0.38 -2.5
3,968,253 - CA265_RS15755 0.39 +0.6
3,968,350 + CA265_RS15755 0.48 +0.3
3,968,370 + CA265_RS15755 0.49 +1.7
3,968,424 + CA265_RS15755 0.54 +1.3
3,968,425 - CA265_RS15755 0.54 -3.4
3,968,461 + CA265_RS15755 0.58 -0.1
3,968,470 - CA265_RS15755 0.58 -1.0
3,968,485 - CA265_RS15755 0.60 +0.1

Or see this region's nucleotide sequence