Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004136 and ABIE53_004137 are separated by 57 nucleotides ABIE53_004137 and ABIE53_004138 are separated by 66 nucleotides
ABIE53_004136: ABIE53_004136 - D-amino-acid dehydrogenase, at 308,941 to 310,173
_004136
ABIE53_004137: ABIE53_004137 - hypothetical protein, at 310,231 to 310,557
_004137
ABIE53_004138: ABIE53_004138 - diguanylate cyclase (GGDEF)-like protein, at 310,624 to 312,048
_004138
Position (kb) 310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 309.424 kb on + strand, within ABIE53_004136 at 309.560 kb on - strand, within ABIE53_004136 at 309.568 kb on + strand, within ABIE53_004136 at 309.612 kb on + strand, within ABIE53_004136 at 309.613 kb on - strand, within ABIE53_004136 at 309.764 kb on - strand, within ABIE53_004136 at 309.821 kb on - strand, within ABIE53_004136 at 310.233 kb on - strand at 310.583 kb on + strand at 310.583 kb on + strand at 310.583 kb on - strand at 310.584 kb on - strand at 310.635 kb on + strand at 310.713 kb on - strand at 310.969 kb on + strand, within ABIE53_004138 at 311.131 kb on - strand, within ABIE53_004138 at 311.317 kb on + strand, within ABIE53_004138 at 311.318 kb on - strand, within ABIE53_004138 at 311.318 kb on - strand, within ABIE53_004138 at 311.318 kb on - strand, within ABIE53_004138 at 311.354 kb on + strand, within ABIE53_004138 at 311.366 kb on - strand, within ABIE53_004138 at 311.366 kb on - strand, within ABIE53_004138 at 311.437 kb on - strand, within ABIE53_004138
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 309,424 + ABIE53_004136 0.39 -0.1 309,560 - ABIE53_004136 0.50 -0.1 309,568 + ABIE53_004136 0.51 -1.5 309,612 + ABIE53_004136 0.54 -0.1 309,613 - ABIE53_004136 0.55 -2.9 309,764 - ABIE53_004136 0.67 +3.2 309,821 - ABIE53_004136 0.71 -1.1 310,233 - +0.8 310,583 + +1.2 310,583 + -1.1 310,583 - -0.6 310,584 - -1.0 310,635 + -1.5 310,713 - +0.2 310,969 + ABIE53_004138 0.24 -0.1 311,131 - ABIE53_004138 0.36 +1.9 311,317 + ABIE53_004138 0.49 -2.4 311,318 - ABIE53_004138 0.49 -2.3 311,318 - ABIE53_004138 0.49 -2.9 311,318 - ABIE53_004138 0.49 +1.2 311,354 + ABIE53_004138 0.51 -1.0 311,366 - ABIE53_004138 0.52 -2.4 311,366 - ABIE53_004138 0.52 -0.1 311,437 - ABIE53_004138 0.57 -0.8
Or see this region's nucleotide sequence