Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004003 and ABIE53_004004 are separated by 21 nucleotides ABIE53_004004 and ABIE53_004005 are separated by 163 nucleotides
ABIE53_004003: ABIE53_004003 - putative MFS family arabinose efflux permease, at 161,095 to 162,345
_004003
ABIE53_004004: ABIE53_004004 - putative peroxidase-related enzyme, at 162,367 to 162,972
_004004
ABIE53_004005: ABIE53_004005 - DNA-binding transcriptional LysR family regulator, at 163,136 to 164,038
_004005
Position (kb) 162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 161.567 kb on + strand, within ABIE53_004003 at 161.568 kb on - strand, within ABIE53_004003 at 161.568 kb on - strand, within ABIE53_004003 at 161.568 kb on - strand, within ABIE53_004003 at 161.568 kb on - strand, within ABIE53_004003 at 161.672 kb on + strand, within ABIE53_004003 at 161.693 kb on + strand, within ABIE53_004003 at 161.693 kb on + strand, within ABIE53_004003 at 161.694 kb on - strand, within ABIE53_004003 at 161.737 kb on - strand, within ABIE53_004003 at 161.793 kb on + strand, within ABIE53_004003 at 161.794 kb on - strand, within ABIE53_004003 at 161.840 kb on - strand, within ABIE53_004003 at 161.907 kb on + strand, within ABIE53_004003 at 161.977 kb on + strand, within ABIE53_004003 at 162.045 kb on - strand, within ABIE53_004003 at 162.113 kb on + strand, within ABIE53_004003 at 162.206 kb on + strand, within ABIE53_004003 at 162.227 kb on - strand at 162.264 kb on + strand at 162.265 kb on - strand at 162.344 kb on - strand at 162.353 kb on - strand at 162.362 kb on + strand at 162.363 kb on - strand at 162.363 kb on - strand at 162.416 kb on + strand at 162.713 kb on + strand, within ABIE53_004004 at 162.714 kb on - strand, within ABIE53_004004 at 162.714 kb on - strand, within ABIE53_004004 at 162.857 kb on - strand, within ABIE53_004004 at 162.995 kb on - strand at 162.995 kb on - strand at 162.996 kb on + strand at 162.996 kb on + strand at 162.996 kb on + strand at 162.997 kb on - strand at 163.000 kb on + strand at 163.000 kb on + strand at 163.000 kb on + strand at 163.001 kb on - strand at 163.001 kb on - strand at 163.001 kb on - strand at 163.013 kb on - strand at 163.048 kb on - strand at 163.048 kb on - strand at 163.048 kb on - strand at 163.048 kb on - strand at 163.048 kb on - strand at 163.048 kb on - strand at 163.064 kb on + strand at 163.065 kb on - strand at 163.453 kb on + strand, within ABIE53_004005 at 163.453 kb on + strand, within ABIE53_004005 at 163.454 kb on - strand, within ABIE53_004005 at 163.454 kb on - strand, within ABIE53_004005 at 163.549 kb on + strand, within ABIE53_004005 at 163.646 kb on + strand, within ABIE53_004005 at 163.646 kb on + strand, within ABIE53_004005 at 163.647 kb on - strand, within ABIE53_004005 at 163.863 kb on - strand, within ABIE53_004005 at 163.863 kb on - strand, within ABIE53_004005
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 161,567 + ABIE53_004003 0.38 -0.9 161,568 - ABIE53_004003 0.38 +0.6 161,568 - ABIE53_004003 0.38 -1.3 161,568 - ABIE53_004003 0.38 -0.4 161,568 - ABIE53_004003 0.38 -0.4 161,672 + ABIE53_004003 0.46 -0.3 161,693 + ABIE53_004003 0.48 -0.4 161,693 + ABIE53_004003 0.48 -1.0 161,694 - ABIE53_004003 0.48 +0.8 161,737 - ABIE53_004003 0.51 +0.6 161,793 + ABIE53_004003 0.56 -1.8 161,794 - ABIE53_004003 0.56 +0.6 161,840 - ABIE53_004003 0.60 -2.8 161,907 + ABIE53_004003 0.65 -2.2 161,977 + ABIE53_004003 0.71 +0.6 162,045 - ABIE53_004003 0.76 -2.1 162,113 + ABIE53_004003 0.81 -0.8 162,206 + ABIE53_004003 0.89 -2.3 162,227 - -0.3 162,264 + +1.1 162,265 - +1.1 162,344 - -1.1 162,353 - +2.1 162,362 + +0.7 162,363 - -1.1 162,363 - -1.9 162,416 + -0.2 162,713 + ABIE53_004004 0.57 -0.0 162,714 - ABIE53_004004 0.57 -1.6 162,714 - ABIE53_004004 0.57 +1.4 162,857 - ABIE53_004004 0.81 -0.7 162,995 - -0.5 162,995 - -0.7 162,996 + -1.0 162,996 + +0.1 162,996 + -1.9 162,997 - +2.1 163,000 + -0.2 163,000 + -0.9 163,000 + +1.9 163,001 - +0.9 163,001 - -1.4 163,001 - +0.1 163,013 - -0.2 163,048 - +0.7 163,048 - +0.3 163,048 - -1.2 163,048 - -0.0 163,048 - +0.3 163,048 - -1.0 163,064 + -0.6 163,065 - -1.0 163,453 + ABIE53_004005 0.35 +0.2 163,453 + ABIE53_004005 0.35 +1.2 163,454 - ABIE53_004005 0.35 -1.5 163,454 - ABIE53_004005 0.35 -2.1 163,549 + ABIE53_004005 0.46 +0.2 163,646 + ABIE53_004005 0.56 -2.0 163,646 + ABIE53_004005 0.56 -0.8 163,647 - ABIE53_004005 0.57 -1.2 163,863 - ABIE53_004005 0.81 +0.2 163,863 - ABIE53_004005 0.81 +1.2
Or see this region's nucleotide sequence