Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003726 and ABIE53_003727 overlap by 4 nucleotides ABIE53_003727 and ABIE53_003728 overlap by 212 nucleotides ABIE53_003728 and ABIE53_003729 are separated by 394 nucleotides
ABIE53_003726: ABIE53_003726 - two-component system phosphate regulon response regulator OmpR, at 4,175,183 to 4,175,923
_003726
ABIE53_003727: ABIE53_003727 - hypothetical protein, at 4,175,920 to 4,176,696
_003727
ABIE53_003728: ABIE53_003728 - signal transduction histidine kinase, at 4,176,485 to 4,177,267
_003728
ABIE53_003729: ABIE53_003729 - protein-tyrosine phosphatase, at 4,177,662 to 4,178,546
_003729
Position (kb) 4176
4177
4178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4175.585 kb on + strand, within ABIE53_003726 at 4175.585 kb on + strand, within ABIE53_003726 at 4175.586 kb on - strand, within ABIE53_003726 at 4175.642 kb on - strand, within ABIE53_003726 at 4175.702 kb on + strand, within ABIE53_003726 at 4175.702 kb on + strand, within ABIE53_003726 at 4175.703 kb on - strand, within ABIE53_003726 at 4175.703 kb on - strand, within ABIE53_003726 at 4175.703 kb on - strand, within ABIE53_003726 at 4175.834 kb on + strand, within ABIE53_003726 at 4175.834 kb on + strand, within ABIE53_003726 at 4175.834 kb on + strand, within ABIE53_003726 at 4175.834 kb on + strand, within ABIE53_003726 at 4175.834 kb on + strand, within ABIE53_003726 at 4175.834 kb on + strand, within ABIE53_003726 at 4175.834 kb on + strand, within ABIE53_003726 at 4175.834 kb on + strand, within ABIE53_003726 at 4175.835 kb on - strand, within ABIE53_003726 at 4175.835 kb on - strand, within ABIE53_003726 at 4175.835 kb on - strand, within ABIE53_003726 at 4175.861 kb on + strand at 4176.694 kb on + strand at 4176.694 kb on + strand at 4176.694 kb on + strand at 4176.694 kb on + strand at 4176.694 kb on + strand at 4176.695 kb on - strand at 4176.695 kb on - strand at 4176.695 kb on - strand at 4176.695 kb on - strand at 4176.695 kb on - strand at 4176.695 kb on - strand at 4176.952 kb on + strand, within ABIE53_003728 at 4177.216 kb on + strand at 4177.216 kb on + strand at 4177.216 kb on + strand at 4177.216 kb on + strand at 4177.216 kb on + strand at 4177.216 kb on + strand at 4177.216 kb on + strand at 4177.216 kb on + strand at 4177.217 kb on - strand at 4177.217 kb on - strand at 4177.284 kb on - strand at 4177.334 kb on + strand at 4177.334 kb on + strand at 4177.334 kb on + strand at 4177.334 kb on + strand at 4177.334 kb on + strand at 4177.335 kb on - strand at 4177.335 kb on - strand at 4177.335 kb on - strand at 4177.335 kb on - strand at 4177.376 kb on + strand at 4177.376 kb on + strand at 4177.377 kb on - strand at 4177.377 kb on - strand at 4177.377 kb on - strand at 4177.377 kb on - strand at 4177.377 kb on - strand at 4177.377 kb on - strand at 4177.377 kb on - strand at 4177.377 kb on - strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.378 kb on + strand at 4177.379 kb on - strand at 4177.379 kb on - strand at 4177.379 kb on - strand at 4177.379 kb on - strand at 4177.379 kb on - strand at 4177.379 kb on - strand at 4177.379 kb on - strand at 4177.379 kb on - strand at 4177.379 kb on - strand at 4177.379 kb on - strand at 4177.379 kb on - strand at 4177.617 kb on + strand at 4177.708 kb on - strand at 4177.729 kb on + strand at 4177.730 kb on - strand at 4177.747 kb on + strand at 4177.747 kb on + strand at 4177.747 kb on + strand at 4177.747 kb on + strand at 4177.748 kb on - strand at 4177.748 kb on - strand at 4177.748 kb on - strand at 4177.748 kb on - strand at 4177.748 kb on - strand at 4177.748 kb on - strand at 4177.886 kb on - strand, within ABIE53_003729 at 4177.903 kb on + strand, within ABIE53_003729 at 4177.903 kb on + strand, within ABIE53_003729 at 4177.903 kb on + strand, within ABIE53_003729 at 4177.903 kb on + strand, within ABIE53_003729 at 4177.903 kb on + strand, within ABIE53_003729 at 4177.903 kb on + strand, within ABIE53_003729 at 4177.904 kb on - strand, within ABIE53_003729 at 4177.904 kb on - strand, within ABIE53_003729 at 4177.904 kb on - strand, within ABIE53_003729 at 4177.904 kb on - strand, within ABIE53_003729 at 4177.904 kb on - strand, within ABIE53_003729 at 4177.904 kb on - strand, within ABIE53_003729 at 4178.074 kb on + strand, within ABIE53_003729 at 4178.074 kb on + strand, within ABIE53_003729 at 4178.074 kb on + strand, within ABIE53_003729 at 4178.074 kb on + strand, within ABIE53_003729 at 4178.074 kb on + strand, within ABIE53_003729 at 4178.075 kb on - strand, within ABIE53_003729 at 4178.075 kb on - strand, within ABIE53_003729 at 4178.075 kb on - strand, within ABIE53_003729 at 4178.075 kb on - strand, within ABIE53_003729 at 4178.075 kb on - strand, within ABIE53_003729 at 4178.075 kb on - strand, within ABIE53_003729 at 4178.237 kb on - strand, within ABIE53_003729 at 4178.237 kb on - strand, within ABIE53_003729 at 4178.237 kb on - strand, within ABIE53_003729
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,175,585 + ABIE53_003726 0.54 +0.5 4,175,585 + ABIE53_003726 0.54 +1.4 4,175,586 - ABIE53_003726 0.54 -1.9 4,175,642 - ABIE53_003726 0.62 -2.8 4,175,702 + ABIE53_003726 0.70 -1.7 4,175,702 + ABIE53_003726 0.70 +0.7 4,175,703 - ABIE53_003726 0.70 -0.4 4,175,703 - ABIE53_003726 0.70 +1.0 4,175,703 - ABIE53_003726 0.70 -2.3 4,175,834 + ABIE53_003726 0.88 -1.2 4,175,834 + ABIE53_003726 0.88 -3.2 4,175,834 + ABIE53_003726 0.88 -1.5 4,175,834 + ABIE53_003726 0.88 +0.4 4,175,834 + ABIE53_003726 0.88 +0.4 4,175,834 + ABIE53_003726 0.88 +1.6 4,175,834 + ABIE53_003726 0.88 -1.4 4,175,834 + ABIE53_003726 0.88 +0.9 4,175,835 - ABIE53_003726 0.88 +0.3 4,175,835 - ABIE53_003726 0.88 -1.2 4,175,835 - ABIE53_003726 0.88 -1.1 4,175,861 + +1.0 4,176,694 + +1.0 4,176,694 + +0.0 4,176,694 + +0.1 4,176,694 + +2.0 4,176,694 + +1.7 4,176,695 - -0.8 4,176,695 - +0.7 4,176,695 - +1.4 4,176,695 - -0.8 4,176,695 - -1.2 4,176,695 - +0.0 4,176,952 + ABIE53_003728 0.60 +1.0 4,177,216 + -0.2 4,177,216 + -1.2 4,177,216 + +2.0 4,177,216 + +1.3 4,177,216 + -2.1 4,177,216 + +0.3 4,177,216 + -0.1 4,177,216 + +0.9 4,177,217 - +1.0 4,177,217 - +0.0 4,177,284 - -0.5 4,177,334 + +2.7 4,177,334 + +1.5 4,177,334 + +2.0 4,177,334 + +0.0 4,177,334 + +0.2 4,177,335 - +1.0 4,177,335 - +0.4 4,177,335 - +0.8 4,177,335 - +1.1 4,177,376 + -0.4 4,177,376 + -0.1 4,177,377 - -0.8 4,177,377 - -0.5 4,177,377 - +1.4 4,177,377 - -0.3 4,177,377 - -0.8 4,177,377 - +1.3 4,177,377 - -0.3 4,177,377 - -2.9 4,177,378 + +0.1 4,177,378 + +0.5 4,177,378 + +0.0 4,177,378 + -1.7 4,177,378 + -1.7 4,177,378 + -0.6 4,177,378 + +0.2 4,177,378 + +0.4 4,177,378 + -0.3 4,177,378 + +0.0 4,177,378 + -0.7 4,177,378 + +1.5 4,177,378 + -0.3 4,177,378 + +0.4 4,177,378 + +0.6 4,177,378 + -0.7 4,177,378 + +1.7 4,177,379 - -1.7 4,177,379 - +2.0 4,177,379 - -1.2 4,177,379 - -0.7 4,177,379 - -0.8 4,177,379 - +0.0 4,177,379 - +1.0 4,177,379 - +1.9 4,177,379 - +0.6 4,177,379 - -0.7 4,177,379 - +2.4 4,177,617 + -1.1 4,177,708 - -0.0 4,177,729 + -0.4 4,177,730 - +1.1 4,177,747 + -0.2 4,177,747 + +0.2 4,177,747 + -1.0 4,177,747 + -1.2 4,177,748 - +3.3 4,177,748 - +2.8 4,177,748 - +0.4 4,177,748 - +1.0 4,177,748 - -1.2 4,177,748 - -0.7 4,177,886 - ABIE53_003729 0.25 -1.0 4,177,903 + ABIE53_003729 0.27 -1.5 4,177,903 + ABIE53_003729 0.27 -0.1 4,177,903 + ABIE53_003729 0.27 +0.3 4,177,903 + ABIE53_003729 0.27 -1.6 4,177,903 + ABIE53_003729 0.27 +0.7 4,177,903 + ABIE53_003729 0.27 +1.8 4,177,904 - ABIE53_003729 0.27 +2.2 4,177,904 - ABIE53_003729 0.27 +2.0 4,177,904 - ABIE53_003729 0.27 -1.4 4,177,904 - ABIE53_003729 0.27 -1.6 4,177,904 - ABIE53_003729 0.27 +0.1 4,177,904 - ABIE53_003729 0.27 +0.3 4,178,074 + ABIE53_003729 0.47 +4.0 4,178,074 + ABIE53_003729 0.47 +0.3 4,178,074 + ABIE53_003729 0.47 +0.6 4,178,074 + ABIE53_003729 0.47 -1.9 4,178,074 + ABIE53_003729 0.47 +1.0 4,178,075 - ABIE53_003729 0.47 -0.7 4,178,075 - ABIE53_003729 0.47 -2.6 4,178,075 - ABIE53_003729 0.47 +1.0 4,178,075 - ABIE53_003729 0.47 -2.4 4,178,075 - ABIE53_003729 0.47 -1.6 4,178,075 - ABIE53_003729 0.47 -0.6 4,178,237 - ABIE53_003729 0.65 -0.3 4,178,237 - ABIE53_003729 0.65 +0.0 4,178,237 - ABIE53_003729 0.65 +0.9
Or see this region's nucleotide sequence