Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001344

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,501,627	+		ABIE53_001342	0.73	+0.9
1,501,690	+		ABIE53_001342	0.76	+1.1
1,501,690	+		ABIE53_001342	0.76	+0.3
1,501,690	+		ABIE53_001342	0.76	+0.1
1,501,690	+		ABIE53_001342	0.76	+0.1
1,501,690	+		ABIE53_001342	0.76	+0.6
1,501,690	+		ABIE53_001342	0.76	-1.0
1,501,690	+		ABIE53_001342	0.76	+0.7
1,501,690	+		ABIE53_001342	0.76	+0.5
1,501,690	+		ABIE53_001342	0.76	+0.5
1,501,690	+		ABIE53_001342	0.76	-0.7
1,501,691	-		ABIE53_001342	0.76	-1.5
1,501,691	-		ABIE53_001342	0.76	+0.1
1,501,691	-		ABIE53_001342	0.76	-0.7
1,501,691	-		ABIE53_001342	0.76	-1.8
1,501,691	-		ABIE53_001342	0.76	-2.0
1,501,691	-		ABIE53_001342	0.76	+0.8
1,501,691	-		ABIE53_001342	0.76	-1.1
1,501,691	-		ABIE53_001342	0.76	-0.9
1,501,691	-		ABIE53_001342	0.76	+0.1
1,501,691	-		ABIE53_001342	0.76	+2.5
1,501,691	-		ABIE53_001342	0.76	-0.5
1,501,691	-		ABIE53_001342	0.76	+0.1
1,501,694	+		ABIE53_001342	0.76	+1.1
1,501,694	+		ABIE53_001342	0.76	+0.5
1,501,695	-		ABIE53_001342	0.76	+0.1
1,501,729	+		ABIE53_001342	0.78	+1.5
1,501,729	+		ABIE53_001342	0.78	-1.2
1,501,729	+		ABIE53_001342	0.78	-0.9
1,501,762	+		ABIE53_001342	0.80	-2.1
1,501,762	+		ABIE53_001342	0.80	-0.2
1,501,763	-		ABIE53_001342	0.80	-0.2
1,501,763	-		ABIE53_001342	0.80	-0.7
1,502,203	-				-1.8
1,502,465	+		ABIE53_001343	0.55	-0.7
1,502,465	+		ABIE53_001343	0.55	+0.1
1,502,465	+		ABIE53_001343	0.55	+0.3
1,502,466	-		ABIE53_001343	0.56	-0.5
1,502,466	-		ABIE53_001343	0.56	+1.1
1,502,466	-		ABIE53_001343	0.56	+2.1
1,502,467	+		ABIE53_001343	0.56	+2.1
1,502,467	+		ABIE53_001343	0.56	-0.2
1,502,468	-		ABIE53_001343	0.56	+0.5
1,502,468	-		ABIE53_001343	0.56	+1.1
1,502,533	+		ABIE53_001343	0.74	-1.9
1,502,534	-		ABIE53_001343	0.74	+0.1
1,502,563	+		ABIE53_001343	0.82	-3.1
1,502,563	+		ABIE53_001343	0.82	-1.5
1,502,627	+				-0.5
1,502,627	+				+0.5
1,502,627	+				-1.2
1,502,627	+				-0.8
1,502,627	+				-1.1
1,502,627	+				-1.6
1,502,627	+				-2.2
1,502,628	-				-1.1
1,502,628	-				-1.1
1,502,628	-				+0.1
1,502,628	-				+0.1
1,502,628	-				+0.5
1,502,628	-				-1.9
1,502,813	+		ABIE53_001344	0.19	-1.4
1,502,814	-		ABIE53_001344	0.19	-2.9
1,502,814	-		ABIE53_001344	0.19	-1.6
1,502,814	-		ABIE53_001344	0.19	-2.9
1,502,814	-		ABIE53_001344	0.19	+0.4
1,502,814	-		ABIE53_001344	0.19	-0.9
1,502,816	+		ABIE53_001344	0.20	-4.5
1,502,816	+		ABIE53_001344	0.20	-0.5
1,502,906	+		ABIE53_001344	0.27	-2.1
1,502,907	-		ABIE53_001344	0.27	-0.5
1,502,907	-		ABIE53_001344	0.27	+1.1
1,502,907	-		ABIE53_001344	0.27	-0.5
1,502,942	+		ABIE53_001344	0.30	-2.2
1,503,038	+		ABIE53_001344	0.39	-2.8
1,503,038	+		ABIE53_001344	0.39	-0.7
1,503,039	-		ABIE53_001344	0.39	-0.9
1,503,440	+		ABIE53_001344	0.73	+2.1
1,503,441	-		ABIE53_001344	0.73	-0.2
1,503,441	-		ABIE53_001344	0.73	+0.1
1,503,441	-		ABIE53_001344	0.73	-1.1
1,503,459	+		ABIE53_001344	0.75	-1.4
1,503,459	+		ABIE53_001344	0.75	-0.2
1,503,459	+		ABIE53_001344	0.75	-2.8
1,503,459	+		ABIE53_001344	0.75	-1.2
1,503,460	-		ABIE53_001344	0.75	-0.9
1,503,460	-		ABIE53_001344	0.75	+1.1
1,503,461	+		ABIE53_001344	0.75	+0.5
1,503,461	+		ABIE53_001344	0.75	+2.1
1,503,461	+		ABIE53_001344	0.75	-0.2
1,503,461	+		ABIE53_001344	0.75	-1.9
1,503,461	+		ABIE53_001344	0.75	-0.5
1,503,461	+		ABIE53_001344	0.75	-1.2
1,503,461	+		ABIE53_001344	0.75	-1.7
1,503,462	-		ABIE53_001344	0.75	-1.1
1,503,462	-		ABIE53_001344	0.75	+0.5
1,503,491	+		ABIE53_001344	0.77	-0.5
1,503,491	+		ABIE53_001344	0.77	+0.1
1,503,491	+		ABIE53_001344	0.77	-2.8
1,503,492	-		ABIE53_001344	0.77	-2.2
1,503,492	-		ABIE53_001344	0.77	-1.4
1,503,492	-		ABIE53_001344	0.77	+0.8
1,503,500	+		ABIE53_001344	0.78	-0.7
1,503,734	+				-3.6
1,503,735	-				-0.7
1,503,800	+				+0.1
1,503,800	+				-0.3
1,503,801	-				-2.2
1,503,801	-				-1.1
1,503,801	-				-0.5
1,503,858	+				-3.0
1,503,859	-				+1.7
1,504,085	+		ABIE53_001345	0.10	-1.0
1,504,086	-		ABIE53_001345	0.10	-1.6
1,504,088	-		ABIE53_001345	0.10	+1.5
1,504,219	+		ABIE53_001345	0.18	+1.1
1,504,219	+		ABIE53_001345	0.18	-0.0
1,504,219	+		ABIE53_001345	0.18	-1.7
1,504,219	+		ABIE53_001345	0.18	-0.2
1,504,220	-		ABIE53_001345	0.18	-0.6
1,504,220	-		ABIE53_001345	0.18	-1.9
1,504,310	+		ABIE53_001345	0.23	-1.6
1,504,311	-		ABIE53_001345	0.23	+0.1
1,504,311	-		ABIE53_001345	0.23	+1.2
1,504,311	-		ABIE53_001345	0.23	+1.4
1,504,311	-		ABIE53_001345	0.23	+0.6
1,504,358	+		ABIE53_001345	0.26	+1.0
1,504,359	-		ABIE53_001345	0.26	-0.9
1,504,359	-		ABIE53_001345	0.26	+0.8
1,504,409	+		ABIE53_001345	0.29	-0.6
1,504,409	+		ABIE53_001345	0.29	+0.1
1,504,409	+		ABIE53_001345	0.29	-0.7
1,504,583	+		ABIE53_001345	0.39	-0.7
1,504,584	-		ABIE53_001345	0.39	-0.5
1,504,584	-		ABIE53_001345	0.39	+0.8
1,504,584	-		ABIE53_001345	0.39	+1.4