Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000583 and ABIE53_000584 are separated by 208 nucleotides ABIE53_000584 and ABIE53_000585 are separated by 71 nucleotides ABIE53_000585 and ABIE53_000586 are separated by 11 nucleotides
ABIE53_000583: ABIE53_000583 - hypothetical protein, at 638,424 to 640,250
_000583
ABIE53_000584: ABIE53_000584 - hypothetical protein, at 640,459 to 640,725
_000584
ABIE53_000585: ABIE53_000585 - hemolysin activation/secretion protein, at 640,797 to 642,551
_000585
ABIE53_000586: ABIE53_000586 - dienelactone hydrolase, at 642,563 to 643,879
_000586
Position (kb) 640
641
642
643 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 639.801 kb on + strand, within ABIE53_000583 at 639.802 kb on - strand, within ABIE53_000583 at 639.802 kb on - strand, within ABIE53_000583 at 639.802 kb on - strand, within ABIE53_000583 at 639.802 kb on - strand, within ABIE53_000583 at 639.802 kb on - strand, within ABIE53_000583 at 639.809 kb on + strand, within ABIE53_000583 at 639.810 kb on - strand, within ABIE53_000583 at 639.811 kb on + strand, within ABIE53_000583 at 639.811 kb on + strand, within ABIE53_000583 at 639.811 kb on + strand, within ABIE53_000583 at 639.811 kb on + strand, within ABIE53_000583 at 639.811 kb on + strand, within ABIE53_000583 at 639.811 kb on + strand, within ABIE53_000583 at 639.812 kb on - strand, within ABIE53_000583 at 639.959 kb on - strand, within ABIE53_000583 at 639.959 kb on - strand, within ABIE53_000583 at 639.959 kb on - strand, within ABIE53_000583 at 640.223 kb on + strand at 640.286 kb on + strand at 640.294 kb on + strand at 640.294 kb on + strand at 640.294 kb on + strand at 640.303 kb on + strand at 640.303 kb on + strand at 640.303 kb on + strand at 640.303 kb on + strand at 640.303 kb on + strand at 640.303 kb on + strand at 640.304 kb on - strand at 640.304 kb on - strand at 640.304 kb on - strand at 640.309 kb on + strand at 640.323 kb on - strand at 640.323 kb on - strand at 640.345 kb on - strand at 640.388 kb on - strand at 640.400 kb on - strand at 640.419 kb on + strand at 640.419 kb on + strand at 640.419 kb on + strand at 640.419 kb on + strand at 640.420 kb on - strand at 640.490 kb on + strand, within ABIE53_000584 at 640.490 kb on + strand, within ABIE53_000584 at 640.490 kb on + strand, within ABIE53_000584 at 640.491 kb on - strand, within ABIE53_000584 at 640.491 kb on - strand, within ABIE53_000584 at 640.530 kb on - strand, within ABIE53_000584 at 640.530 kb on - strand, within ABIE53_000584 at 640.592 kb on + strand, within ABIE53_000584 at 640.593 kb on - strand, within ABIE53_000584 at 640.593 kb on - strand, within ABIE53_000584 at 640.650 kb on + strand, within ABIE53_000584 at 640.693 kb on + strand, within ABIE53_000584 at 640.693 kb on + strand, within ABIE53_000584 at 640.694 kb on - strand, within ABIE53_000584 at 640.694 kb on - strand, within ABIE53_000584 at 640.723 kb on + strand at 640.772 kb on + strand at 640.772 kb on + strand at 640.773 kb on - strand at 640.812 kb on - strand at 640.812 kb on - strand at 640.812 kb on - strand at 640.843 kb on + strand at 640.844 kb on - strand at 640.844 kb on - strand at 641.095 kb on + strand, within ABIE53_000585 at 641.096 kb on - strand, within ABIE53_000585 at 641.096 kb on - strand, within ABIE53_000585 at 641.096 kb on - strand, within ABIE53_000585 at 641.263 kb on + strand, within ABIE53_000585 at 641.263 kb on + strand, within ABIE53_000585 at 641.263 kb on + strand, within ABIE53_000585 at 641.263 kb on + strand, within ABIE53_000585 at 641.462 kb on + strand, within ABIE53_000585 at 641.462 kb on + strand, within ABIE53_000585 at 641.467 kb on - strand, within ABIE53_000585 at 641.509 kb on + strand, within ABIE53_000585 at 641.509 kb on + strand, within ABIE53_000585 at 641.510 kb on - strand, within ABIE53_000585 at 641.510 kb on - strand, within ABIE53_000585 at 641.584 kb on + strand, within ABIE53_000585 at 641.584 kb on + strand, within ABIE53_000585 at 641.584 kb on + strand, within ABIE53_000585 at 641.584 kb on + strand, within ABIE53_000585 at 641.585 kb on - strand, within ABIE53_000585 at 641.597 kb on + strand, within ABIE53_000585 at 641.597 kb on + strand, within ABIE53_000585 at 641.597 kb on + strand, within ABIE53_000585 at 641.727 kb on + strand, within ABIE53_000585 at 641.763 kb on + strand, within ABIE53_000585 at 641.763 kb on + strand, within ABIE53_000585 at 641.763 kb on + strand, within ABIE53_000585 at 641.763 kb on + strand, within ABIE53_000585 at 641.763 kb on + strand, within ABIE53_000585 at 641.763 kb on + strand, within ABIE53_000585 at 641.764 kb on - strand, within ABIE53_000585 at 641.764 kb on - strand, within ABIE53_000585 at 641.764 kb on - strand, within ABIE53_000585 at 641.764 kb on - strand, within ABIE53_000585 at 641.764 kb on - strand, within ABIE53_000585 at 641.764 kb on - strand, within ABIE53_000585 at 641.764 kb on - strand, within ABIE53_000585 at 641.988 kb on + strand, within ABIE53_000585 at 641.988 kb on + strand, within ABIE53_000585 at 641.989 kb on - strand, within ABIE53_000585 at 641.989 kb on - strand, within ABIE53_000585 at 642.085 kb on - strand, within ABIE53_000585 at 642.201 kb on + strand, within ABIE53_000585 at 642.201 kb on + strand, within ABIE53_000585 at 642.202 kb on - strand, within ABIE53_000585 at 642.205 kb on + strand, within ABIE53_000585 at 642.206 kb on - strand, within ABIE53_000585 at 642.285 kb on + strand, within ABIE53_000585 at 642.286 kb on - strand, within ABIE53_000585 at 642.286 kb on - strand, within ABIE53_000585 at 642.301 kb on + strand, within ABIE53_000585 at 642.301 kb on + strand, within ABIE53_000585 at 642.301 kb on + strand, within ABIE53_000585 at 642.302 kb on - strand, within ABIE53_000585 at 642.302 kb on - strand, within ABIE53_000585 at 642.302 kb on - strand, within ABIE53_000585 at 642.302 kb on - strand, within ABIE53_000585 at 642.302 kb on - strand, within ABIE53_000585 at 642.302 kb on - strand, within ABIE53_000585 at 642.302 kb on - strand, within ABIE53_000585 at 642.336 kb on + strand, within ABIE53_000585 at 642.336 kb on + strand, within ABIE53_000585 at 642.336 kb on + strand, within ABIE53_000585 at 642.337 kb on - strand, within ABIE53_000585 at 642.337 kb on - strand, within ABIE53_000585 at 642.352 kb on - strand, within ABIE53_000585 at 642.352 kb on - strand, within ABIE53_000585 at 642.361 kb on + strand, within ABIE53_000585 at 642.362 kb on - strand, within ABIE53_000585 at 642.422 kb on - strand at 642.459 kb on + strand at 642.549 kb on + strand at 642.574 kb on + strand at 642.575 kb on - strand at 642.580 kb on + strand at 642.652 kb on + strand at 642.653 kb on - strand at 642.705 kb on + strand, within ABIE53_000586 at 642.705 kb on + strand, within ABIE53_000586 at 642.705 kb on + strand, within ABIE53_000586 at 642.706 kb on - strand, within ABIE53_000586 at 642.706 kb on - strand, within ABIE53_000586 at 642.706 kb on - strand, within ABIE53_000586 at 642.876 kb on + strand, within ABIE53_000586 at 642.877 kb on - strand, within ABIE53_000586 at 642.948 kb on + strand, within ABIE53_000586 at 642.948 kb on + strand, within ABIE53_000586 at 642.948 kb on + strand, within ABIE53_000586 at 643.055 kb on - strand, within ABIE53_000586 at 643.055 kb on - strand, within ABIE53_000586 at 643.055 kb on - strand, within ABIE53_000586 at 643.055 kb on - strand, within ABIE53_000586 at 643.056 kb on + strand, within ABIE53_000586 at 643.056 kb on + strand, within ABIE53_000586 at 643.056 kb on + strand, within ABIE53_000586 at 643.056 kb on + strand, within ABIE53_000586 at 643.056 kb on + strand, within ABIE53_000586 at 643.056 kb on + strand, within ABIE53_000586 at 643.057 kb on - strand, within ABIE53_000586 at 643.057 kb on - strand, within ABIE53_000586 at 643.057 kb on - strand, within ABIE53_000586 at 643.057 kb on - strand, within ABIE53_000586 at 643.057 kb on - strand, within ABIE53_000586 at 643.057 kb on - strand, within ABIE53_000586 at 643.057 kb on - strand, within ABIE53_000586 at 643.057 kb on - strand, within ABIE53_000586 at 643.057 kb on - strand, within ABIE53_000586 at 643.101 kb on + strand, within ABIE53_000586 at 643.158 kb on + strand, within ABIE53_000586 at 643.158 kb on + strand, within ABIE53_000586 at 643.158 kb on + strand, within ABIE53_000586 at 643.158 kb on + strand, within ABIE53_000586 at 643.194 kb on + strand, within ABIE53_000586 at 643.305 kb on + strand, within ABIE53_000586 at 643.351 kb on + strand, within ABIE53_000586 at 643.352 kb on - strand, within ABIE53_000586 at 643.368 kb on + strand, within ABIE53_000586 at 643.369 kb on - strand, within ABIE53_000586 at 643.369 kb on - strand, within ABIE53_000586 at 643.369 kb on - strand, within ABIE53_000586 at 643.386 kb on + strand, within ABIE53_000586 at 643.386 kb on + strand, within ABIE53_000586 at 643.386 kb on + strand, within ABIE53_000586 at 643.386 kb on + strand, within ABIE53_000586 at 643.386 kb on + strand, within ABIE53_000586 at 643.386 kb on + strand, within ABIE53_000586 at 643.387 kb on - strand, within ABIE53_000586 at 643.387 kb on - strand, within ABIE53_000586 at 643.387 kb on - strand, within ABIE53_000586 at 643.387 kb on - strand, within ABIE53_000586 at 643.459 kb on - strand, within ABIE53_000586 at 643.459 kb on - strand, within ABIE53_000586 at 643.459 kb on - strand, within ABIE53_000586
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 639,801 + ABIE53_000583 0.75 -1.1 639,802 - ABIE53_000583 0.75 -0.3 639,802 - ABIE53_000583 0.75 +0.4 639,802 - ABIE53_000583 0.75 -2.3 639,802 - ABIE53_000583 0.75 -1.5 639,802 - ABIE53_000583 0.75 -0.3 639,809 + ABIE53_000583 0.76 -1.0 639,810 - ABIE53_000583 0.76 -1.5 639,811 + ABIE53_000583 0.76 -0.3 639,811 + ABIE53_000583 0.76 +0.6 639,811 + ABIE53_000583 0.76 +0.4 639,811 + ABIE53_000583 0.76 -1.2 639,811 + ABIE53_000583 0.76 -0.0 639,811 + ABIE53_000583 0.76 -2.1 639,812 - ABIE53_000583 0.76 -2.0 639,959 - ABIE53_000583 0.84 +2.0 639,959 - ABIE53_000583 0.84 +1.0 639,959 - ABIE53_000583 0.84 -2.8 640,223 + -0.0 640,286 + -0.3 640,294 + -0.6 640,294 + +2.6 640,294 + -2.0 640,303 + -0.0 640,303 + +0.8 640,303 + +1.0 640,303 + -0.6 640,303 + -1.9 640,303 + -0.8 640,304 - -0.3 640,304 - -2.4 640,304 - -2.5 640,309 + -1.3 640,323 - -1.7 640,323 - -0.3 640,345 - -0.8 640,388 - +1.0 640,400 - -1.7 640,419 + +3.6 640,419 + +0.3 640,419 + +0.1 640,419 + +0.2 640,420 - +1.0 640,490 + ABIE53_000584 0.12 -0.3 640,490 + ABIE53_000584 0.12 +0.3 640,490 + ABIE53_000584 0.12 +1.0 640,491 - ABIE53_000584 0.12 +2.0 640,491 - ABIE53_000584 0.12 -1.2 640,530 - ABIE53_000584 0.27 -1.8 640,530 - ABIE53_000584 0.27 -2.3 640,592 + ABIE53_000584 0.50 -0.3 640,593 - ABIE53_000584 0.50 -0.0 640,593 - ABIE53_000584 0.50 +1.0 640,650 + ABIE53_000584 0.72 -1.6 640,693 + ABIE53_000584 0.88 -0.0 640,693 + ABIE53_000584 0.88 -0.2 640,694 - ABIE53_000584 0.88 -0.0 640,694 - ABIE53_000584 0.88 +0.4 640,723 + -0.6 640,772 + -2.3 640,772 + -2.3 640,773 - -0.6 640,812 - +5.0 640,812 - -1.2 640,812 - -0.4 640,843 + -1.8 640,844 - -0.6 640,844 - -3.1 641,095 + ABIE53_000585 0.17 -1.2 641,096 - ABIE53_000585 0.17 -0.0 641,096 - ABIE53_000585 0.17 -0.6 641,096 - ABIE53_000585 0.17 -0.8 641,263 + ABIE53_000585 0.27 -2.5 641,263 + ABIE53_000585 0.27 -0.3 641,263 + ABIE53_000585 0.27 -0.6 641,263 + ABIE53_000585 0.27 -0.3 641,462 + ABIE53_000585 0.38 +0.1 641,462 + ABIE53_000585 0.38 -3.0 641,467 - ABIE53_000585 0.38 -2.2 641,509 + ABIE53_000585 0.41 -0.0 641,509 + ABIE53_000585 0.41 -1.1 641,510 - ABIE53_000585 0.41 -0.3 641,510 - ABIE53_000585 0.41 -0.6 641,584 + ABIE53_000585 0.45 -0.3 641,584 + ABIE53_000585 0.45 -2.3 641,584 + ABIE53_000585 0.45 -0.3 641,584 + ABIE53_000585 0.45 +2.2 641,585 - ABIE53_000585 0.45 +2.0 641,597 + ABIE53_000585 0.46 -0.2 641,597 + ABIE53_000585 0.46 +0.8 641,597 + ABIE53_000585 0.46 -1.3 641,727 + ABIE53_000585 0.53 -1.2 641,763 + ABIE53_000585 0.55 -0.8 641,763 + ABIE53_000585 0.55 -0.3 641,763 + ABIE53_000585 0.55 -2.3 641,763 + ABIE53_000585 0.55 -0.8 641,763 + ABIE53_000585 0.55 -1.6 641,763 + ABIE53_000585 0.55 -0.0 641,764 - ABIE53_000585 0.55 +1.6 641,764 - ABIE53_000585 0.55 -1.1 641,764 - ABIE53_000585 0.55 -0.0 641,764 - ABIE53_000585 0.55 -3.2 641,764 - ABIE53_000585 0.55 -0.3 641,764 - ABIE53_000585 0.55 -0.0 641,764 - ABIE53_000585 0.55 -2.2 641,988 + ABIE53_000585 0.68 -1.4 641,988 + ABIE53_000585 0.68 +3.0 641,989 - ABIE53_000585 0.68 +0.3 641,989 - ABIE53_000585 0.68 -1.3 642,085 - ABIE53_000585 0.73 -0.6 642,201 + ABIE53_000585 0.80 +0.1 642,201 + ABIE53_000585 0.80 -1.5 642,202 - ABIE53_000585 0.80 +2.6 642,205 + ABIE53_000585 0.80 -1.0 642,206 - ABIE53_000585 0.80 +0.4 642,285 + ABIE53_000585 0.85 -1.7 642,286 - ABIE53_000585 0.85 +1.7 642,286 - ABIE53_000585 0.85 -1.6 642,301 + ABIE53_000585 0.86 -2.1 642,301 + ABIE53_000585 0.86 +2.0 642,301 + ABIE53_000585 0.86 +2.3 642,302 - ABIE53_000585 0.86 -2.8 642,302 - ABIE53_000585 0.86 -1.2 642,302 - ABIE53_000585 0.86 -0.6 642,302 - ABIE53_000585 0.86 -0.3 642,302 - ABIE53_000585 0.86 +2.0 642,302 - ABIE53_000585 0.86 -2.2 642,302 - ABIE53_000585 0.86 +0.4 642,336 + ABIE53_000585 0.88 -1.3 642,336 + ABIE53_000585 0.88 -3.1 642,336 + ABIE53_000585 0.88 -1.8 642,337 - ABIE53_000585 0.88 +1.2 642,337 - ABIE53_000585 0.88 +0.4 642,352 - ABIE53_000585 0.89 +1.0 642,352 - ABIE53_000585 0.89 +1.0 642,361 + ABIE53_000585 0.89 -1.3 642,362 - ABIE53_000585 0.89 -1.0 642,422 - +3.0 642,459 + -0.5 642,549 + -0.8 642,574 + -2.5 642,575 - -1.7 642,580 + +0.4 642,652 + -0.8 642,653 - +0.6 642,705 + ABIE53_000586 0.11 -1.6 642,705 + ABIE53_000586 0.11 -0.2 642,705 + ABIE53_000586 0.11 -0.0 642,706 - ABIE53_000586 0.11 -2.5 642,706 - ABIE53_000586 0.11 -1.2 642,706 - ABIE53_000586 0.11 -1.8 642,876 + ABIE53_000586 0.24 -0.8 642,877 - ABIE53_000586 0.24 -1.8 642,948 + ABIE53_000586 0.29 +0.4 642,948 + ABIE53_000586 0.29 +1.0 642,948 + ABIE53_000586 0.29 -1.8 643,055 - ABIE53_000586 0.37 -1.9 643,055 - ABIE53_000586 0.37 -3.0 643,055 - ABIE53_000586 0.37 -2.0 643,055 - ABIE53_000586 0.37 +2.0 643,056 + ABIE53_000586 0.37 +0.4 643,056 + ABIE53_000586 0.37 +0.4 643,056 + ABIE53_000586 0.37 -0.9 643,056 + ABIE53_000586 0.37 -2.2 643,056 + ABIE53_000586 0.37 -0.6 643,056 + ABIE53_000586 0.37 -0.3 643,057 - ABIE53_000586 0.38 -1.3 643,057 - ABIE53_000586 0.38 -1.6 643,057 - ABIE53_000586 0.38 +0.4 643,057 - ABIE53_000586 0.38 -1.7 643,057 - ABIE53_000586 0.38 -1.6 643,057 - ABIE53_000586 0.38 -0.6 643,057 - ABIE53_000586 0.38 -2.1 643,057 - ABIE53_000586 0.38 +0.6 643,057 - ABIE53_000586 0.38 -1.9 643,101 + ABIE53_000586 0.41 -0.5 643,158 + ABIE53_000586 0.45 +1.6 643,158 + ABIE53_000586 0.45 +0.7 643,158 + ABIE53_000586 0.45 +0.4 643,158 + ABIE53_000586 0.45 -2.3 643,194 + ABIE53_000586 0.48 -0.6 643,305 + ABIE53_000586 0.56 -0.8 643,351 + ABIE53_000586 0.60 -1.7 643,352 - ABIE53_000586 0.60 -0.8 643,368 + ABIE53_000586 0.61 +0.6 643,369 - ABIE53_000586 0.61 -1.1 643,369 - ABIE53_000586 0.61 -0.6 643,369 - ABIE53_000586 0.61 -1.5 643,386 + ABIE53_000586 0.62 +0.2 643,386 + ABIE53_000586 0.62 -1.6 643,386 + ABIE53_000586 0.62 -1.9 643,386 + ABIE53_000586 0.62 -1.7 643,386 + ABIE53_000586 0.62 -0.0 643,386 + ABIE53_000586 0.62 -4.0 643,387 - ABIE53_000586 0.63 -1.8 643,387 - ABIE53_000586 0.63 +1.0 643,387 - ABIE53_000586 0.63 +0.7 643,387 - ABIE53_000586 0.63 -0.0 643,459 - ABIE53_000586 0.68 -2.7 643,459 - ABIE53_000586 0.68 -1.0 643,459 - ABIE53_000586 0.68 -0.8
Or see this region's nucleotide sequence