Experiment: acetate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3474 and Shew_3475 are separated by 238 nucleotides Shew_3475 and Shew_3476 are separated by 156 nucleotides Shew_3476 and Shew_3477 overlap by 30 nucleotides Shew_3477 and Shew_3478 are separated by 186 nucleotides
Shew_3474: Shew_3474 - ATP-dependent DNA helicase RecQ (RefSeq), at 4,160,255 to 4,162,087
_3474
Shew_3475: Shew_3475 - hypothetical protein (RefSeq), at 4,162,326 to 4,162,790
_3475
Shew_3476: Shew_3476 - transporter DMT superfamily protein (RefSeq), at 4,162,947 to 4,163,834
_3476
Shew_3477: Shew_3477 - hypothetical protein (RefSeq), at 4,163,805 to 4,164,344
_3477
Shew_3478: Shew_3478 - N-acetylglutamate synthase (RefSeq), at 4,164,531 to 4,165,853
_3478
Position (kb) 4162
4163
4164 Strain fitness (log2 ratio) -1
0
1 at 4161.971 kb on - strand at 4161.994 kb on - strand at 4161.994 kb on - strand at 4162.141 kb on + strand at 4162.307 kb on - strand at 4162.312 kb on - strand at 4162.353 kb on - strand at 4162.632 kb on - strand, within Shew_3475 at 4162.848 kb on + strand at 4162.856 kb on - strand at 4162.921 kb on + strand at 4163.023 kb on + strand at 4163.084 kb on - strand, within Shew_3476 at 4163.170 kb on - strand, within Shew_3476 at 4163.296 kb on + strand, within Shew_3476 at 4163.755 kb on - strand at 4163.960 kb on + strand, within Shew_3477 at 4164.097 kb on - strand, within Shew_3477 at 4164.494 kb on + strand at 4164.494 kb on + strand at 4164.502 kb on - strand at 4164.502 kb on - strand at 4164.779 kb on - strand, within Shew_3478 at 4164.809 kb on - strand, within Shew_3478 at 4164.810 kb on - strand, within Shew_3478
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 25 mM remove 4,161,971 - -0.4 4,161,994 - +0.2 4,161,994 - -0.1 4,162,141 + +0.5 4,162,307 - +0.1 4,162,312 - -0.3 4,162,353 - +0.5 4,162,632 - Shew_3475 0.66 +0.1 4,162,848 + +0.1 4,162,856 - +0.6 4,162,921 + +0.0 4,163,023 + +0.2 4,163,084 - Shew_3476 0.15 +0.2 4,163,170 - Shew_3476 0.25 +0.0 4,163,296 + Shew_3476 0.39 +0.2 4,163,755 - +0.0 4,163,960 + Shew_3477 0.29 +0.0 4,164,097 - Shew_3477 0.54 +0.1 4,164,494 + +0.2 4,164,494 + +0.3 4,164,502 - +0.4 4,164,502 - -0.8 4,164,779 - Shew_3478 0.19 +0.2 4,164,809 - Shew_3478 0.21 -0.3 4,164,810 - Shew_3478 0.21 +0.2
Or see this region's nucleotide sequence