Experiment: acetate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1261 and Shew_1262 are separated by 140 nucleotides Shew_1262 and Shew_1263 are separated by 147 nucleotides Shew_1263 and Shew_1264 overlap by 4 nucleotides
Shew_1261: Shew_1261 - type III restriction enzyme, res subunit (RefSeq), at 1,457,762 to 1,460,347
_1261
Shew_1262: Shew_1262 - hypothetical protein (RefSeq), at 1,460,488 to 1,460,853
_1262
Shew_1263: Shew_1263 - hypothetical protein (RefSeq), at 1,461,001 to 1,461,984
_1263
Shew_1264: Shew_1264 - UvrD/REP helicase (RefSeq), at 1,461,981 to 1,464,017
_1264
Position (kb)
1461
1462 Strain fitness (log2 ratio)
-1
0
1 at 1460.445 kb on - strand at 1461.019 kb on + strand at 1461.066 kb on - strand at 1461.076 kb on - strand at 1461.577 kb on + strand, within Shew_1263 at 1461.579 kb on + strand, within Shew_1263 at 1461.663 kb on - strand, within Shew_1263 at 1461.844 kb on - strand, within Shew_1263 at 1461.925 kb on + strand at 1462.061 kb on - strand at 1462.082 kb on + strand at 1462.191 kb on + strand, within Shew_1264
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 25 mM remove 1,460,445 - +0.6 1,461,019 + -0.0 1,461,066 - -0.1 1,461,076 - +0.2 1,461,577 + Shew_1263 0.59 +1.4 1,461,579 + Shew_1263 0.59 -0.2 1,461,663 - Shew_1263 0.67 +0.4 1,461,844 - Shew_1263 0.86 +0.3 1,461,925 + +0.1 1,462,061 - +0.6 1,462,082 + -0.3 1,462,191 + Shew_1264 0.10 +0.4
Or see this region's nucleotide sequence