Experiment: acetate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0501 and Shew_0502 are separated by 9 nucleotides Shew_0502 and Shew_0503 are separated by 5 nucleotides Shew_0503 and Shew_0504 are separated by 264 nucleotides
Shew_0501: Shew_0501 - hypothetical protein (RefSeq), at 560,444 to 560,728
_0501
Shew_0502: Shew_0502 - hypothetical protein (RefSeq), at 560,738 to 561,265
_0502
Shew_0503: Shew_0503 - thioredoxin domain-containing protein (RefSeq), at 561,271 to 561,612
_0503
Shew_0504: Shew_0504 - NnrS family protein (RefSeq), at 561,877 to 563,088
_0504
Position (kb) 561
562 Strain fitness (log2 ratio) -2
-1
0
1 at 560.272 kb on - strand at 560.294 kb on + strand at 560.487 kb on + strand, within Shew_0501 at 560.497 kb on + strand, within Shew_0501 at 560.699 kb on + strand, within Shew_0501 at 560.707 kb on - strand at 561.393 kb on - strand, within Shew_0503 at 561.401 kb on - strand, within Shew_0503 at 561.615 kb on + strand at 561.621 kb on + strand at 561.623 kb on - strand at 561.678 kb on - strand at 561.805 kb on + strand at 561.808 kb on - strand at 561.808 kb on - strand at 561.808 kb on - strand at 561.808 kb on - strand at 562.331 kb on + strand, within Shew_0504 at 562.518 kb on + strand, within Shew_0504 at 562.518 kb on + strand, within Shew_0504
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 25 mM remove 560,272 - +0.3 560,294 + +0.1 560,487 + Shew_0501 0.15 +0.1 560,497 + Shew_0501 0.19 -0.0 560,699 + Shew_0501 0.89 -0.2 560,707 - -0.2 561,393 - Shew_0503 0.36 -0.2 561,401 - Shew_0503 0.38 -1.9 561,615 + +0.2 561,621 + +0.3 561,623 - -0.1 561,678 - +0.1 561,805 + +0.2 561,808 - +0.1 561,808 - -0.5 561,808 - -0.4 561,808 - -0.4 562,331 + Shew_0504 0.37 +0.0 562,518 + Shew_0504 0.53 +0.6 562,518 + Shew_0504 0.53 -0.1
Or see this region's nucleotide sequence