Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0025 and tRNA-Ala are separated by 173 nucleotides tRNA-Ala and DVU0026 are separated by 364 nucleotides
DVU0025: DVU0025 - sensory box histidine kinase (TIGR), at 27,714 to 29,873
DVU0025
DVU_tRNA-Ala-2: tRNA-Ala - tRNA with anticodon GGC for Ala (VIMSS-AUTO), at 30,047 to 30,122
tRNA-Ala
DVU0026: DVU0026 - conserved hypothetical protein (TIGR), at 30,487 to 31,059
DVU0026
Position (kb) 30
31 Strain fitness (log2 ratio) -1
0
1 at 29.095 kb on + strand, within DVU0025 at 29.124 kb on + strand, within DVU0025 at 29.126 kb on - strand, within DVU0025 at 29.163 kb on - strand, within DVU0025 at 29.217 kb on + strand, within DVU0025 at 29.225 kb on - strand, within DVU0025 at 29.237 kb on + strand, within DVU0025 at 29.241 kb on + strand, within DVU0025 at 29.271 kb on + strand, within DVU0025 at 29.271 kb on + strand, within DVU0025 at 29.279 kb on - strand, within DVU0025 at 29.352 kb on + strand, within DVU0025 at 29.390 kb on - strand, within DVU0025 at 29.463 kb on + strand, within DVU0025 at 29.497 kb on + strand, within DVU0025 at 29.546 kb on + strand, within DVU0025 at 29.569 kb on - strand, within DVU0025 at 29.571 kb on + strand, within DVU0025 at 29.579 kb on + strand, within DVU0025 at 29.596 kb on + strand, within DVU0025 at 29.676 kb on + strand at 29.702 kb on + strand at 29.722 kb on - strand at 29.758 kb on - strand at 29.778 kb on - strand at 29.789 kb on + strand at 29.866 kb on - strand at 29.906 kb on - strand at 29.933 kb on - strand at 29.940 kb on + strand at 29.952 kb on - strand at 30.091 kb on + strand, within tRNA-Ala at 30.227 kb on + strand at 30.240 kb on - strand at 30.305 kb on + strand at 30.366 kb on - strand at 30.379 kb on + strand at 30.485 kb on - strand at 30.708 kb on + strand, within DVU0026 at 30.763 kb on - strand, within DVU0026 at 30.809 kb on - strand, within DVU0026 at 30.818 kb on + strand, within DVU0026 at 30.833 kb on + strand, within DVU0026 at 30.849 kb on - strand, within DVU0026 at 30.909 kb on - strand, within DVU0026 at 30.938 kb on + strand, within DVU0026 at 30.938 kb on + strand, within DVU0026 at 31.008 kb on + strand at 31.052 kb on - strand at 31.080 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 29,095 + DVU0025 0.64 -0.2 29,124 + DVU0025 0.65 +0.1 29,126 - DVU0025 0.65 +0.1 29,163 - DVU0025 0.67 -0.0 29,217 + DVU0025 0.70 -0.0 29,225 - DVU0025 0.70 -0.2 29,237 + DVU0025 0.71 -1.7 29,241 + DVU0025 0.71 -1.4 29,271 + DVU0025 0.72 -0.1 29,271 + DVU0025 0.72 +0.2 29,279 - DVU0025 0.72 +0.2 29,352 + DVU0025 0.76 +0.2 29,390 - DVU0025 0.78 +0.0 29,463 + DVU0025 0.81 +0.1 29,497 + DVU0025 0.83 -0.3 29,546 + DVU0025 0.85 +0.3 29,569 - DVU0025 0.86 +0.7 29,571 + DVU0025 0.86 +0.2 29,579 + DVU0025 0.86 -0.0 29,596 + DVU0025 0.87 +0.5 29,676 + -0.0 29,702 + -0.3 29,722 - -1.3 29,758 - +0.7 29,778 - +0.2 29,789 + -0.8 29,866 - +0.0 29,906 - +0.3 29,933 - +0.0 29,940 + -1.0 29,952 - +0.3 30,091 + tRNA-Ala DVU_tRNA-Ala-2 0.58 +0.2 30,227 + +0.0 30,240 - -1.3 30,305 + -0.2 30,366 - -0.3 30,379 + +0.1 30,485 - -0.1 30,708 + DVU0026 0.39 -0.1 30,763 - DVU0026 0.48 +1.2 30,809 - DVU0026 0.56 +0.4 30,818 + DVU0026 0.58 -0.1 30,833 + DVU0026 0.60 +0.4 30,849 - DVU0026 0.63 -1.3 30,909 - DVU0026 0.74 +0.8 30,938 + DVU0026 0.79 +0.1 30,938 + DVU0026 0.79 +1.2 31,008 + -0.5 31,052 - +0.3 31,080 + -0.2
Or see this region's nucleotide sequence