Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3026

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3024 and Dshi_3025 are separated by 106 nucleotidesDshi_3025 and Dshi_3026 are separated by 55 nucleotidesDshi_3026 and Dshi_3027 are separated by 62 nucleotidesDshi_3027 and Dshi_3028 are separated by 4 nucleotides Dshi_3024: Dshi_3024 - transcriptional regulator, AraC family (RefSeq), at 3,194,067 to 3,194,930 _3024 Dshi_3025: Dshi_3025 - OmpA/MotB domain protein (RefSeq), at 3,195,037 to 3,195,663 _3025 Dshi_3026: Dshi_3026 - GntR domain protein (RefSeq), at 3,195,719 to 3,196,486 _3026 Dshi_3027: Dshi_3027 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 3,196,549 to 3,197,109 _3027 Dshi_3028: Dshi_3028 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 3,197,114 to 3,197,638 _3028 Position (kb) 3195 3196 3197Strain fitness (log2 ratio) -2 -1 0 1at 3194.756 kb on + strand, within Dshi_3024at 3194.756 kb on + strand, within Dshi_3024at 3194.764 kb on - strand, within Dshi_3024at 3194.897 kb on - strandat 3194.921 kb on + strandat 3195.035 kb on - strandat 3195.054 kb on - strandat 3195.321 kb on + strand, within Dshi_3025at 3195.352 kb on + strand, within Dshi_3025at 3195.357 kb on + strand, within Dshi_3025at 3195.444 kb on - strand, within Dshi_3025at 3195.478 kb on - strand, within Dshi_3025at 3195.803 kb on - strand, within Dshi_3026at 3195.903 kb on - strand, within Dshi_3026at 3196.064 kb on + strand, within Dshi_3026at 3196.495 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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3,194,756 + Dshi_3024 0.80 +0.0
3,194,756 + Dshi_3024 0.80 +0.8
3,194,764 - Dshi_3024 0.81 -1.1
3,194,897 - +0.3
3,194,921 + +1.2
3,195,035 - +0.5
3,195,054 - -0.0
3,195,321 + Dshi_3025 0.45 +0.1
3,195,352 + Dshi_3025 0.50 +1.1
3,195,357 + Dshi_3025 0.51 +0.0
3,195,444 - Dshi_3025 0.65 +0.1
3,195,478 - Dshi_3025 0.70 +0.6
3,195,803 - Dshi_3026 0.11 -1.0
3,195,903 - Dshi_3026 0.24 -1.7
3,196,064 + Dshi_3026 0.45 -1.9
3,196,495 - +1.3

Or see this region's nucleotide sequence