Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1544

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1543 and Dshi_1544 are separated by 23 nucleotidesDshi_1544 and Dshi_1545 are separated by 305 nucleotides Dshi_1543: Dshi_1543 - Patatin (RefSeq), at 1,604,724 to 1,605,764 _1543 Dshi_1544: Dshi_1544 - 3-hydroxybutyrate dehydrogenase (RefSeq), at 1,605,788 to 1,606,561 _1544 Dshi_1545: Dshi_1545 - extracellular solute-binding protein family 5 (RefSeq), at 1,606,867 to 1,608,687 _1545 Position (kb) 1605 1606 1607Strain fitness (log2 ratio) -1 0 1 2 3at 1604.915 kb on - strand, within Dshi_1543at 1605.086 kb on - strand, within Dshi_1543at 1605.108 kb on + strand, within Dshi_1543at 1605.116 kb on - strand, within Dshi_1543at 1605.116 kb on - strand, within Dshi_1543at 1605.148 kb on - strand, within Dshi_1543at 1605.505 kb on - strand, within Dshi_1543at 1605.670 kb on + strandat 1605.695 kb on + strandat 1606.001 kb on + strand, within Dshi_1544at 1606.359 kb on + strand, within Dshi_1544at 1606.427 kb on + strand, within Dshi_1544at 1606.435 kb on - strand, within Dshi_1544at 1606.449 kb on + strand, within Dshi_1544at 1606.465 kb on - strand, within Dshi_1544at 1606.476 kb on - strand, within Dshi_1544at 1606.484 kb on + strandat 1606.509 kb on - strandat 1606.718 kb on - strandat 1606.812 kb on - strandat 1606.814 kb on - strandat 1606.822 kb on - strandat 1606.966 kb on + strandat 1607.010 kb on + strandat 1607.029 kb on + strandat 1607.029 kb on - strandat 1607.039 kb on - strandat 1607.162 kb on - strand, within Dshi_1545at 1607.176 kb on + strand, within Dshi_1545at 1607.207 kb on - strand, within Dshi_1545at 1607.219 kb on + strand, within Dshi_1545at 1607.239 kb on - strand, within Dshi_1545at 1607.451 kb on - strand, within Dshi_1545at 1607.532 kb on - strand, within Dshi_1545

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,604,915 - Dshi_1543 0.18 +0.1
1,605,086 - Dshi_1543 0.35 -0.1
1,605,108 + Dshi_1543 0.37 -0.2
1,605,116 - Dshi_1543 0.38 +0.3
1,605,116 - Dshi_1543 0.38 -0.2
1,605,148 - Dshi_1543 0.41 +0.1
1,605,505 - Dshi_1543 0.75 -0.8
1,605,670 + +0.6
1,605,695 + +0.3
1,606,001 + Dshi_1544 0.28 -0.6
1,606,359 + Dshi_1544 0.74 +0.5
1,606,427 + Dshi_1544 0.83 +0.2
1,606,435 - Dshi_1544 0.84 +0.4
1,606,449 + Dshi_1544 0.85 +1.0
1,606,465 - Dshi_1544 0.87 +1.5
1,606,476 - Dshi_1544 0.89 +0.8
1,606,484 + +0.7
1,606,509 - +0.1
1,606,718 - -0.7
1,606,812 - -0.3
1,606,814 - +0.0
1,606,822 - +3.2
1,606,966 + +0.2
1,607,010 + -0.1
1,607,029 + +0.1
1,607,029 - +0.3
1,607,039 - -0.2
1,607,162 - Dshi_1545 0.16 +1.2
1,607,176 + Dshi_1545 0.17 +0.1
1,607,207 - Dshi_1545 0.19 -0.3
1,607,219 + Dshi_1545 0.19 +0.0
1,607,239 - Dshi_1545 0.20 -0.7
1,607,451 - Dshi_1545 0.32 -0.2
1,607,532 - Dshi_1545 0.37 -0.1

Or see this region's nucleotide sequence