Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1297

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1296 and Dshi_1297 are separated by 165 nucleotidesDshi_1297 and Dshi_1298 are separated by 24 nucleotidesDshi_1298 and Dshi_1299 are separated by 74 nucleotides Dshi_1296: Dshi_1296 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 1,349,879 to 1,351,090 _1296 Dshi_1297: Dshi_1297 - acyl-CoA dehydrogenase domain protein (RefSeq), at 1,351,256 to 1,352,419 _1297 Dshi_1298: Dshi_1298 - hypothetical protein (RefSeq), at 1,352,444 to 1,352,782 _1298 Dshi_1299: Dshi_1299 - OmpW family protein (RefSeq), at 1,352,857 to 1,353,465 _1299 Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -1 0 1 2 3at 1350.392 kb on - strand, within Dshi_1296at 1350.540 kb on + strand, within Dshi_1296at 1350.713 kb on + strand, within Dshi_1296at 1350.713 kb on + strand, within Dshi_1296at 1350.847 kb on + strand, within Dshi_1296at 1350.941 kb on + strand, within Dshi_1296at 1350.949 kb on - strand, within Dshi_1296at 1350.981 kb on + strandat 1351.192 kb on + strandat 1351.570 kb on + strand, within Dshi_1297at 1351.575 kb on + strand, within Dshi_1297at 1351.600 kb on - strand, within Dshi_1297at 1351.647 kb on - strand, within Dshi_1297at 1351.774 kb on - strand, within Dshi_1297at 1351.848 kb on + strand, within Dshi_1297at 1351.996 kb on - strand, within Dshi_1297at 1352.049 kb on + strand, within Dshi_1297at 1352.116 kb on + strand, within Dshi_1297at 1352.158 kb on + strand, within Dshi_1297at 1352.223 kb on + strand, within Dshi_1297at 1352.250 kb on + strand, within Dshi_1297at 1352.273 kb on + strand, within Dshi_1297at 1352.278 kb on + strand, within Dshi_1297at 1352.334 kb on - strandat 1352.399 kb on - strandat 1352.511 kb on + strand, within Dshi_1298at 1352.599 kb on + strand, within Dshi_1298at 1352.616 kb on + strand, within Dshi_1298at 1352.621 kb on - strand, within Dshi_1298at 1352.828 kb on + strandat 1352.829 kb on + strandat 1352.855 kb on + strandat 1352.862 kb on - strandat 1352.884 kb on - strandat 1353.095 kb on - strand, within Dshi_1299at 1353.119 kb on + strand, within Dshi_1299at 1353.119 kb on + strand, within Dshi_1299at 1353.369 kb on - strand, within Dshi_1299

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,350,392 - Dshi_1296 0.42 +1.0
1,350,540 + Dshi_1296 0.55 -0.2
1,350,713 + Dshi_1296 0.69 +1.0
1,350,713 + Dshi_1296 0.69 +0.5
1,350,847 + Dshi_1296 0.80 +0.6
1,350,941 + Dshi_1296 0.88 -0.1
1,350,949 - Dshi_1296 0.88 +0.3
1,350,981 + -0.3
1,351,192 + -0.1
1,351,570 + Dshi_1297 0.27 +0.2
1,351,575 + Dshi_1297 0.27 -0.5
1,351,600 - Dshi_1297 0.30 +0.3
1,351,647 - Dshi_1297 0.34 +0.1
1,351,774 - Dshi_1297 0.45 +0.8
1,351,848 + Dshi_1297 0.51 -0.4
1,351,996 - Dshi_1297 0.64 +0.1
1,352,049 + Dshi_1297 0.68 +0.1
1,352,116 + Dshi_1297 0.74 +0.3
1,352,158 + Dshi_1297 0.77 +0.9
1,352,223 + Dshi_1297 0.83 +0.4
1,352,250 + Dshi_1297 0.85 +0.1
1,352,273 + Dshi_1297 0.87 -0.7
1,352,278 + Dshi_1297 0.88 +0.0
1,352,334 - -0.5
1,352,399 - -0.6
1,352,511 + Dshi_1298 0.20 +1.0
1,352,599 + Dshi_1298 0.46 +0.5
1,352,616 + Dshi_1298 0.51 +3.0
1,352,621 - Dshi_1298 0.52 +1.9
1,352,828 + +1.0
1,352,829 + +2.2
1,352,855 + +1.0
1,352,862 - -0.9
1,352,884 - -0.8
1,353,095 - Dshi_1299 0.39 +1.2
1,353,119 + Dshi_1299 0.43 -0.3
1,353,119 + Dshi_1299 0.43 -1.3
1,353,369 - Dshi_1299 0.84 -0.3

Or see this region's nucleotide sequence