Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0584

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_R0012 and Dshi_0583 are separated by 133 nucleotidesDshi_0583 and Dshi_0584 are separated by 16 nucleotidesDshi_0584 and Dshi_0585 overlap by 23 nucleotidesDshi_0585 and Dshi_0586 are separated by 184 nucleotides Dshi_R0012: Dshi_R0012 - tRNA-Gln (RefSeq), at 573,863 to 573,937 _R0012 Dshi_0583: Dshi_0583 - 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq), at 574,071 to 574,904 _0583 Dshi_0584: Dshi_0584 - lipopolysaccharide biosynthesis protein (RefSeq), at 574,921 to 576,630 _0584 Dshi_0585: Dshi_0585 - ABC transporter related (RefSeq), at 576,608 to 577,267 _0585 Dshi_0586: Dshi_0586 - permease (RefSeq), at 577,452 to 578,498 _0586 Position (kb) 574 575 576 577Strain fitness (log2 ratio) -2 -1 0 1 2at 574.056 kb on - strandat 575.095 kb on + strand, within Dshi_0584at 575.103 kb on - strand, within Dshi_0584at 575.105 kb on + strand, within Dshi_0584at 575.105 kb on + strand, within Dshi_0584at 575.105 kb on + strand, within Dshi_0584at 575.113 kb on - strand, within Dshi_0584at 575.140 kb on - strand, within Dshi_0584at 575.141 kb on - strand, within Dshi_0584at 575.207 kb on + strand, within Dshi_0584at 575.380 kb on + strand, within Dshi_0584at 575.454 kb on - strand, within Dshi_0584at 575.503 kb on + strand, within Dshi_0584at 575.503 kb on + strand, within Dshi_0584at 575.511 kb on - strand, within Dshi_0584at 575.563 kb on - strand, within Dshi_0584at 575.634 kb on - strand, within Dshi_0584at 575.718 kb on - strand, within Dshi_0584at 575.740 kb on - strand, within Dshi_0584at 575.752 kb on + strand, within Dshi_0584at 575.795 kb on + strand, within Dshi_0584at 575.876 kb on + strand, within Dshi_0584at 575.876 kb on + strand, within Dshi_0584at 575.935 kb on - strand, within Dshi_0584at 575.947 kb on + strand, within Dshi_0584at 575.994 kb on - strand, within Dshi_0584at 576.000 kb on + strand, within Dshi_0584at 576.057 kb on + strand, within Dshi_0584at 576.065 kb on - strand, within Dshi_0584at 576.087 kb on + strand, within Dshi_0584at 576.095 kb on - strand, within Dshi_0584at 576.095 kb on - strand, within Dshi_0584at 576.109 kb on - strand, within Dshi_0584at 576.204 kb on + strand, within Dshi_0584at 576.258 kb on + strand, within Dshi_0584at 576.286 kb on + strand, within Dshi_0584at 576.303 kb on + strand, within Dshi_0584at 576.338 kb on - strand, within Dshi_0584at 576.382 kb on + strand, within Dshi_0584at 576.382 kb on + strand, within Dshi_0584at 576.382 kb on + strand, within Dshi_0584at 576.390 kb on - strand, within Dshi_0584at 576.390 kb on - strand, within Dshi_0584at 576.446 kb on + strand, within Dshi_0584at 576.574 kb on - strandat 576.619 kb on - strandat 576.634 kb on + strandat 576.655 kb on + strandat 576.736 kb on + strand, within Dshi_0585at 576.811 kb on - strand, within Dshi_0585at 576.815 kb on + strand, within Dshi_0585at 576.878 kb on + strand, within Dshi_0585at 576.950 kb on + strand, within Dshi_0585at 577.016 kb on + strand, within Dshi_0585at 577.018 kb on + strand, within Dshi_0585at 577.018 kb on + strand, within Dshi_0585at 577.025 kb on - strand, within Dshi_0585at 577.027 kb on - strand, within Dshi_0585at 577.119 kb on + strand, within Dshi_0585at 577.175 kb on + strand, within Dshi_0585at 577.175 kb on + strand, within Dshi_0585at 577.183 kb on - strand, within Dshi_0585at 577.210 kb on - strandat 577.275 kb on + strandat 577.277 kb on + strandat 577.277 kb on + strandat 577.283 kb on - strandat 577.285 kb on - strandat 577.285 kb on - strandat 577.326 kb on + strandat 577.374 kb on + strandat 577.374 kb on + strandat 577.374 kb on + strandat 577.384 kb on + strandat 577.385 kb on + strandat 577.393 kb on - strandat 577.393 kb on - strandat 577.398 kb on + strandat 577.403 kb on + strandat 577.411 kb on - strandat 577.413 kb on + strandat 577.413 kb on + strandat 577.413 kb on + strandat 577.421 kb on - strandat 577.421 kb on - strandat 577.439 kb on - strandat 577.543 kb on + strandat 577.558 kb on - strand, within Dshi_0586at 577.596 kb on + strand, within Dshi_0586at 577.615 kb on + strand, within Dshi_0586at 577.615 kb on + strand, within Dshi_0586at 577.623 kb on - strand, within Dshi_0586

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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574,056 - -0.2
575,095 + Dshi_0584 0.10 +0.3
575,103 - Dshi_0584 0.11 -0.4
575,105 + Dshi_0584 0.11 -0.6
575,105 + Dshi_0584 0.11 +0.1
575,105 + Dshi_0584 0.11 +0.0
575,113 - Dshi_0584 0.11 -0.1
575,140 - Dshi_0584 0.13 +0.1
575,141 - Dshi_0584 0.13 +0.4
575,207 + Dshi_0584 0.17 -0.4
575,380 + Dshi_0584 0.27 +1.2
575,454 - Dshi_0584 0.31 -0.1
575,503 + Dshi_0584 0.34 -0.5
575,503 + Dshi_0584 0.34 -0.2
575,511 - Dshi_0584 0.35 -1.7
575,563 - Dshi_0584 0.38 -0.5
575,634 - Dshi_0584 0.42 +1.6
575,718 - Dshi_0584 0.47 -1.8
575,740 - Dshi_0584 0.48 -0.2
575,752 + Dshi_0584 0.49 -0.2
575,795 + Dshi_0584 0.51 -0.4
575,876 + Dshi_0584 0.56 +0.2
575,876 + Dshi_0584 0.56 -0.6
575,935 - Dshi_0584 0.59 -1.8
575,947 + Dshi_0584 0.60 +0.2
575,994 - Dshi_0584 0.63 -0.9
576,000 + Dshi_0584 0.63 +0.0
576,057 + Dshi_0584 0.66 -0.9
576,065 - Dshi_0584 0.67 -0.2
576,087 + Dshi_0584 0.68 -0.3
576,095 - Dshi_0584 0.69 -1.1
576,095 - Dshi_0584 0.69 +0.6
576,109 - Dshi_0584 0.69 +1.0
576,204 + Dshi_0584 0.75 -0.2
576,258 + Dshi_0584 0.78 -0.5
576,286 + Dshi_0584 0.80 +0.1
576,303 + Dshi_0584 0.81 +1.8
576,338 - Dshi_0584 0.83 +0.6
576,382 + Dshi_0584 0.85 -0.2
576,382 + Dshi_0584 0.85 -0.0
576,382 + Dshi_0584 0.85 +0.6
576,390 - Dshi_0584 0.86 -0.6
576,390 - Dshi_0584 0.86 +0.4
576,446 + Dshi_0584 0.89 +0.3
576,574 - +0.2
576,619 - +0.3
576,634 + +0.4
576,655 + +0.3
576,736 + Dshi_0585 0.19 -0.2
576,811 - Dshi_0585 0.31 -1.8
576,815 + Dshi_0585 0.31 +0.7
576,878 + Dshi_0585 0.41 +0.1
576,950 + Dshi_0585 0.52 +0.4
577,016 + Dshi_0585 0.62 +0.0
577,018 + Dshi_0585 0.62 -0.2
577,018 + Dshi_0585 0.62 -1.5
577,025 - Dshi_0585 0.63 -0.2
577,027 - Dshi_0585 0.63 +1.0
577,119 + Dshi_0585 0.77 +0.9
577,175 + Dshi_0585 0.86 +0.3
577,175 + Dshi_0585 0.86 -0.3
577,183 - Dshi_0585 0.87 -0.7
577,210 - -0.0
577,275 + -1.6
577,277 + +0.7
577,277 + +0.7
577,283 - -0.3
577,285 - +0.0
577,285 - -0.2
577,326 + -0.0
577,374 + +0.2
577,374 + +0.5
577,374 + +0.3
577,384 + -0.0
577,385 + +0.2
577,393 - -0.4
577,393 - +0.0
577,398 + -0.6
577,403 + +0.1
577,411 - +0.6
577,413 + +1.1
577,413 + +0.5
577,413 + +0.0
577,421 - -0.4
577,421 - +0.1
577,439 - -0.9
577,543 + +0.4
577,558 - Dshi_0586 0.10 +0.8
577,596 + Dshi_0586 0.14 -0.3
577,615 + Dshi_0586 0.16 +0.4
577,615 + Dshi_0586 0.16 +0.1
577,623 - Dshi_0586 0.16 -0.2

Or see this region's nucleotide sequence