Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0022 and DVU0024 are separated by 229 nucleotides DVU0024 and DVU0025 are separated by 75 nucleotides DVU0025 and tRNA-Ala are separated by 173 nucleotides tRNA-Ala and DVU0026 are separated by 364 nucleotides
DVU0022: DVU0022 - HAMP domain/GGDEF domain/EAL domain protein (TIGR), at 24,857 to 27,238
DVU0022
DVU0024: DVU0024 - conserved hypothetical protein (TIGR), at 27,468 to 27,638
DVU0024
DVU0025: DVU0025 - sensory box histidine kinase (TIGR), at 27,714 to 29,873
DVU0025
DVU_tRNA-Ala-2: tRNA-Ala - tRNA with anticodon GGC for Ala (VIMSS-AUTO), at 30,047 to 30,122
tRNA-Ala
DVU0026: DVU0026 - conserved hypothetical protein (TIGR), at 30,487 to 31,059
DVU0026
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -1
0
1 at 26.716 kb on - strand, within DVU0022 at 26.735 kb on + strand, within DVU0022 at 26.743 kb on - strand, within DVU0022 at 26.754 kb on + strand, within DVU0022 at 26.806 kb on - strand, within DVU0022 at 26.811 kb on - strand, within DVU0022 at 26.847 kb on + strand, within DVU0022 at 26.852 kb on + strand, within DVU0022 at 26.905 kb on - strand, within DVU0022 at 26.954 kb on - strand, within DVU0022 at 26.988 kb on + strand, within DVU0022 at 26.988 kb on + strand, within DVU0022 at 27.026 kb on + strand at 27.070 kb on + strand at 27.078 kb on - strand at 27.105 kb on + strand at 27.129 kb on - strand at 27.145 kb on - strand at 27.147 kb on + strand at 27.150 kb on - strand at 27.270 kb on + strand at 27.270 kb on + strand at 27.278 kb on - strand at 27.278 kb on - strand at 27.288 kb on - strand at 27.372 kb on - strand at 27.481 kb on - strand at 27.598 kb on + strand, within DVU0024 at 27.632 kb on + strand at 27.673 kb on - strand at 27.673 kb on - strand at 27.719 kb on - strand at 27.723 kb on + strand at 27.727 kb on + strand at 27.760 kb on - strand at 27.765 kb on + strand at 27.777 kb on - strand at 27.870 kb on + strand at 27.956 kb on + strand, within DVU0025 at 27.958 kb on + strand, within DVU0025 at 27.968 kb on + strand, within DVU0025 at 28.023 kb on - strand, within DVU0025 at 28.042 kb on + strand, within DVU0025 at 28.060 kb on - strand, within DVU0025 at 28.143 kb on + strand, within DVU0025 at 28.162 kb on + strand, within DVU0025 at 28.187 kb on + strand, within DVU0025 at 28.232 kb on - strand, within DVU0025 at 28.240 kb on + strand, within DVU0025 at 28.336 kb on + strand, within DVU0025 at 28.336 kb on + strand, within DVU0025 at 28.344 kb on - strand, within DVU0025 at 28.344 kb on - strand, within DVU0025 at 28.406 kb on + strand, within DVU0025 at 28.407 kb on + strand, within DVU0025 at 28.407 kb on + strand, within DVU0025 at 28.408 kb on - strand, within DVU0025 at 28.415 kb on - strand, within DVU0025 at 28.435 kb on + strand, within DVU0025 at 28.456 kb on + strand, within DVU0025 at 28.456 kb on + strand, within DVU0025 at 28.524 kb on - strand, within DVU0025 at 28.602 kb on + strand, within DVU0025 at 28.620 kb on + strand, within DVU0025 at 28.641 kb on - strand, within DVU0025 at 28.666 kb on + strand, within DVU0025 at 28.669 kb on - strand, within DVU0025 at 28.702 kb on - strand, within DVU0025 at 28.718 kb on + strand, within DVU0025 at 28.738 kb on + strand, within DVU0025 at 28.776 kb on + strand, within DVU0025 at 28.781 kb on + strand, within DVU0025 at 28.789 kb on - strand, within DVU0025 at 28.789 kb on - strand, within DVU0025 at 28.794 kb on - strand, within DVU0025 at 28.817 kb on + strand, within DVU0025 at 28.832 kb on - strand, within DVU0025 at 28.839 kb on + strand, within DVU0025 at 28.854 kb on - strand, within DVU0025 at 28.854 kb on - strand, within DVU0025 at 28.889 kb on - strand, within DVU0025 at 28.924 kb on - strand, within DVU0025 at 28.954 kb on + strand, within DVU0025 at 28.957 kb on - strand, within DVU0025 at 28.959 kb on + strand, within DVU0025 at 28.962 kb on - strand, within DVU0025 at 28.962 kb on - strand, within DVU0025 at 28.967 kb on - strand, within DVU0025 at 29.095 kb on + strand, within DVU0025 at 29.124 kb on + strand, within DVU0025 at 29.126 kb on - strand, within DVU0025 at 29.163 kb on - strand, within DVU0025 at 29.217 kb on + strand, within DVU0025 at 29.225 kb on - strand, within DVU0025 at 29.237 kb on + strand, within DVU0025 at 29.241 kb on + strand, within DVU0025 at 29.271 kb on + strand, within DVU0025 at 29.271 kb on + strand, within DVU0025 at 29.279 kb on - strand, within DVU0025 at 29.352 kb on + strand, within DVU0025 at 29.390 kb on - strand, within DVU0025 at 29.463 kb on + strand, within DVU0025 at 29.497 kb on + strand, within DVU0025 at 29.546 kb on + strand, within DVU0025 at 29.569 kb on - strand, within DVU0025 at 29.571 kb on + strand, within DVU0025 at 29.579 kb on + strand, within DVU0025 at 29.596 kb on + strand, within DVU0025 at 29.676 kb on + strand at 29.702 kb on + strand at 29.722 kb on - strand at 29.758 kb on - strand at 29.778 kb on - strand at 29.789 kb on + strand at 29.866 kb on - strand at 29.906 kb on - strand at 29.933 kb on - strand at 29.940 kb on + strand at 29.952 kb on - strand at 30.091 kb on + strand, within tRNA-Ala at 30.227 kb on + strand at 30.240 kb on - strand at 30.305 kb on + strand at 30.366 kb on - strand at 30.379 kb on + strand at 30.485 kb on - strand at 30.708 kb on + strand, within DVU0026 at 30.763 kb on - strand, within DVU0026 at 30.809 kb on - strand, within DVU0026 at 30.818 kb on + strand, within DVU0026 at 30.833 kb on + strand, within DVU0026 at 30.849 kb on - strand, within DVU0026
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 26,716 - DVU0022 0.78 -0.2 26,735 + DVU0022 0.79 +0.2 26,743 - DVU0022 0.79 -1.1 26,754 + DVU0022 0.80 +0.1 26,806 - DVU0022 0.82 -0.1 26,811 - DVU0022 0.82 +0.3 26,847 + DVU0022 0.84 +0.6 26,852 + DVU0022 0.84 +0.8 26,905 - DVU0022 0.86 -0.2 26,954 - DVU0022 0.88 +0.1 26,988 + DVU0022 0.89 -0.0 26,988 + DVU0022 0.89 -0.9 27,026 + +0.2 27,070 + +0.1 27,078 - -0.5 27,105 + -0.1 27,129 - -0.2 27,145 - -0.2 27,147 + -0.5 27,150 - -0.1 27,270 + -0.1 27,270 + -0.1 27,278 - -0.4 27,278 - -1.3 27,288 - -0.8 27,372 - +0.3 27,481 - -0.6 27,598 + DVU0024 0.76 +0.7 27,632 + +0.3 27,673 - -0.3 27,673 - +0.1 27,719 - -1.5 27,723 + +0.2 27,727 + +0.2 27,760 - -0.8 27,765 + +0.7 27,777 - +0.0 27,870 + +0.6 27,956 + DVU0025 0.11 -1.1 27,958 + DVU0025 0.11 -1.2 27,968 + DVU0025 0.12 +0.3 28,023 - DVU0025 0.14 -0.3 28,042 + DVU0025 0.15 +0.3 28,060 - DVU0025 0.16 -0.2 28,143 + DVU0025 0.20 -0.1 28,162 + DVU0025 0.21 +0.2 28,187 + DVU0025 0.22 -0.1 28,232 - DVU0025 0.24 -0.1 28,240 + DVU0025 0.24 +0.7 28,336 + DVU0025 0.29 -0.2 28,336 + DVU0025 0.29 -1.2 28,344 - DVU0025 0.29 -0.1 28,344 - DVU0025 0.29 +0.8 28,406 + DVU0025 0.32 +0.5 28,407 + DVU0025 0.32 -0.9 28,407 + DVU0025 0.32 -1.5 28,408 - DVU0025 0.32 -0.2 28,415 - DVU0025 0.32 +0.2 28,435 + DVU0025 0.33 +0.0 28,456 + DVU0025 0.34 -0.2 28,456 + DVU0025 0.34 +0.7 28,524 - DVU0025 0.38 -1.7 28,602 + DVU0025 0.41 +0.1 28,620 + DVU0025 0.42 -0.3 28,641 - DVU0025 0.43 -0.2 28,666 + DVU0025 0.44 -1.4 28,669 - DVU0025 0.44 +0.2 28,702 - DVU0025 0.46 -0.1 28,718 + DVU0025 0.46 +0.1 28,738 + DVU0025 0.47 -0.8 28,776 + DVU0025 0.49 -1.4 28,781 + DVU0025 0.49 +0.4 28,789 - DVU0025 0.50 -0.4 28,789 - DVU0025 0.50 +0.4 28,794 - DVU0025 0.50 +1.1 28,817 + DVU0025 0.51 -0.4 28,832 - DVU0025 0.52 +0.2 28,839 + DVU0025 0.52 -0.0 28,854 - DVU0025 0.53 -0.7 28,854 - DVU0025 0.53 -0.3 28,889 - DVU0025 0.54 -0.4 28,924 - DVU0025 0.56 -0.0 28,954 + DVU0025 0.57 -0.7 28,957 - DVU0025 0.58 +0.1 28,959 + DVU0025 0.58 +0.2 28,962 - DVU0025 0.58 +0.3 28,962 - DVU0025 0.58 +0.2 28,967 - DVU0025 0.58 -0.2 29,095 + DVU0025 0.64 -0.2 29,124 + DVU0025 0.65 +0.1 29,126 - DVU0025 0.65 +0.1 29,163 - DVU0025 0.67 -0.0 29,217 + DVU0025 0.70 -0.0 29,225 - DVU0025 0.70 -0.2 29,237 + DVU0025 0.71 -1.7 29,241 + DVU0025 0.71 -1.4 29,271 + DVU0025 0.72 -0.1 29,271 + DVU0025 0.72 +0.2 29,279 - DVU0025 0.72 +0.2 29,352 + DVU0025 0.76 +0.2 29,390 - DVU0025 0.78 +0.0 29,463 + DVU0025 0.81 +0.1 29,497 + DVU0025 0.83 -0.3 29,546 + DVU0025 0.85 +0.3 29,569 - DVU0025 0.86 +0.7 29,571 + DVU0025 0.86 +0.2 29,579 + DVU0025 0.86 -0.0 29,596 + DVU0025 0.87 +0.5 29,676 + -0.0 29,702 + -0.3 29,722 - -1.3 29,758 - +0.7 29,778 - +0.2 29,789 + -0.8 29,866 - +0.0 29,906 - +0.3 29,933 - +0.0 29,940 + -1.0 29,952 - +0.3 30,091 + tRNA-Ala DVU_tRNA-Ala-2 0.58 +0.2 30,227 + +0.0 30,240 - -1.3 30,305 + -0.2 30,366 - -0.3 30,379 + +0.1 30,485 - -0.1 30,708 + DVU0026 0.39 -0.1 30,763 - DVU0026 0.48 +1.2 30,809 - DVU0026 0.56 +0.4 30,818 + DVU0026 0.58 -0.1 30,833 + DVU0026 0.60 +0.4 30,849 - DVU0026 0.63 -1.3
Or see this region's nucleotide sequence