Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0022 and DVU0024 are separated by 229 nucleotides DVU0024 and DVU0025 are separated by 75 nucleotides
DVU0022: DVU0022 - HAMP domain/GGDEF domain/EAL domain protein (TIGR), at 24,857 to 27,238
DVU0022
DVU0024: DVU0024 - conserved hypothetical protein (TIGR), at 27,468 to 27,638
DVU0024
DVU0025: DVU0025 - sensory box histidine kinase (TIGR), at 27,714 to 29,873
DVU0025
Position (kb) 27
28 Strain fitness (log2 ratio) -1
0
1 at 26.552 kb on - strand, within DVU0022 at 26.577 kb on + strand, within DVU0022 at 26.590 kb on + strand, within DVU0022 at 26.613 kb on + strand, within DVU0022 at 26.613 kb on + strand, within DVU0022 at 26.618 kb on + strand, within DVU0022 at 26.625 kb on + strand, within DVU0022 at 26.677 kb on + strand, within DVU0022 at 26.698 kb on + strand, within DVU0022 at 26.698 kb on + strand, within DVU0022 at 26.703 kb on + strand, within DVU0022 at 26.711 kb on - strand, within DVU0022 at 26.716 kb on - strand, within DVU0022 at 26.735 kb on + strand, within DVU0022 at 26.743 kb on - strand, within DVU0022 at 26.754 kb on + strand, within DVU0022 at 26.806 kb on - strand, within DVU0022 at 26.811 kb on - strand, within DVU0022 at 26.847 kb on + strand, within DVU0022 at 26.852 kb on + strand, within DVU0022 at 26.905 kb on - strand, within DVU0022 at 26.954 kb on - strand, within DVU0022 at 26.988 kb on + strand, within DVU0022 at 26.988 kb on + strand, within DVU0022 at 27.026 kb on + strand at 27.070 kb on + strand at 27.078 kb on - strand at 27.105 kb on + strand at 27.129 kb on - strand at 27.145 kb on - strand at 27.147 kb on + strand at 27.150 kb on - strand at 27.270 kb on + strand at 27.270 kb on + strand at 27.278 kb on - strand at 27.278 kb on - strand at 27.288 kb on - strand at 27.372 kb on - strand at 27.481 kb on - strand at 27.598 kb on + strand, within DVU0024 at 27.632 kb on + strand at 27.673 kb on - strand at 27.673 kb on - strand at 27.719 kb on - strand at 27.723 kb on + strand at 27.727 kb on + strand at 27.760 kb on - strand at 27.765 kb on + strand at 27.777 kb on - strand at 27.870 kb on + strand at 27.956 kb on + strand, within DVU0025 at 27.958 kb on + strand, within DVU0025 at 27.968 kb on + strand, within DVU0025 at 28.023 kb on - strand, within DVU0025 at 28.042 kb on + strand, within DVU0025 at 28.060 kb on - strand, within DVU0025 at 28.143 kb on + strand, within DVU0025 at 28.162 kb on + strand, within DVU0025 at 28.187 kb on + strand, within DVU0025 at 28.232 kb on - strand, within DVU0025 at 28.240 kb on + strand, within DVU0025 at 28.336 kb on + strand, within DVU0025 at 28.336 kb on + strand, within DVU0025 at 28.344 kb on - strand, within DVU0025 at 28.344 kb on - strand, within DVU0025 at 28.406 kb on + strand, within DVU0025 at 28.407 kb on + strand, within DVU0025 at 28.407 kb on + strand, within DVU0025 at 28.408 kb on - strand, within DVU0025 at 28.415 kb on - strand, within DVU0025 at 28.435 kb on + strand, within DVU0025 at 28.456 kb on + strand, within DVU0025 at 28.456 kb on + strand, within DVU0025 at 28.524 kb on - strand, within DVU0025 at 28.602 kb on + strand, within DVU0025 at 28.620 kb on + strand, within DVU0025
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 26,552 - DVU0022 0.71 +0.1 26,577 + DVU0022 0.72 -0.1 26,590 + DVU0022 0.73 -0.8 26,613 + DVU0022 0.74 -0.2 26,613 + DVU0022 0.74 +0.1 26,618 + DVU0022 0.74 -0.6 26,625 + DVU0022 0.74 -0.1 26,677 + DVU0022 0.76 +0.8 26,698 + DVU0022 0.77 -1.0 26,698 + DVU0022 0.77 +0.3 26,703 + DVU0022 0.77 -0.3 26,711 - DVU0022 0.78 +0.6 26,716 - DVU0022 0.78 -0.2 26,735 + DVU0022 0.79 +0.2 26,743 - DVU0022 0.79 -1.1 26,754 + DVU0022 0.80 +0.1 26,806 - DVU0022 0.82 -0.1 26,811 - DVU0022 0.82 +0.3 26,847 + DVU0022 0.84 +0.6 26,852 + DVU0022 0.84 +0.8 26,905 - DVU0022 0.86 -0.2 26,954 - DVU0022 0.88 +0.1 26,988 + DVU0022 0.89 -0.0 26,988 + DVU0022 0.89 -0.9 27,026 + +0.2 27,070 + +0.1 27,078 - -0.5 27,105 + -0.1 27,129 - -0.2 27,145 - -0.2 27,147 + -0.5 27,150 - -0.1 27,270 + -0.1 27,270 + -0.1 27,278 - -0.4 27,278 - -1.3 27,288 - -0.8 27,372 - +0.3 27,481 - -0.6 27,598 + DVU0024 0.76 +0.7 27,632 + +0.3 27,673 - -0.3 27,673 - +0.1 27,719 - -1.5 27,723 + +0.2 27,727 + +0.2 27,760 - -0.8 27,765 + +0.7 27,777 - +0.0 27,870 + +0.6 27,956 + DVU0025 0.11 -1.1 27,958 + DVU0025 0.11 -1.2 27,968 + DVU0025 0.12 +0.3 28,023 - DVU0025 0.14 -0.3 28,042 + DVU0025 0.15 +0.3 28,060 - DVU0025 0.16 -0.2 28,143 + DVU0025 0.20 -0.1 28,162 + DVU0025 0.21 +0.2 28,187 + DVU0025 0.22 -0.1 28,232 - DVU0025 0.24 -0.1 28,240 + DVU0025 0.24 +0.7 28,336 + DVU0025 0.29 -0.2 28,336 + DVU0025 0.29 -1.2 28,344 - DVU0025 0.29 -0.1 28,344 - DVU0025 0.29 +0.8 28,406 + DVU0025 0.32 +0.5 28,407 + DVU0025 0.32 -0.9 28,407 + DVU0025 0.32 -1.5 28,408 - DVU0025 0.32 -0.2 28,415 - DVU0025 0.32 +0.2 28,435 + DVU0025 0.33 +0.0 28,456 + DVU0025 0.34 -0.2 28,456 + DVU0025 0.34 +0.7 28,524 - DVU0025 0.38 -1.7 28,602 + DVU0025 0.41 +0.1 28,620 + DVU0025 0.42 -0.3
Or see this region's nucleotide sequence